genomes
overview
Browse genomes by isolation enviroment
Click a Location to retrieve environmental data
We manually annotate the genome collection with EnvO-Lite terms to offer users further comparative perspectives. The tag-cloud below can be used to sort genomes by EnvO-Lite annotations. Clicking on coordinates in the "Location" column will access environmental data via our mapserver. See our Annotation Overview for more details.
Please note that "marine habitat" refers to marine water!
unclassified (11) air (1) animal-associated habitat (876) aquatic habitat (43) cultured habitat (38) extreme habitat (21) food (62) freshwater habitat (28) hot spring (61) hydrothermal vent (27) marine habitat (227) organism-associated habitat (21) plant-associated habitat (90) sediment (85) sludge (17) soil (171) terrestrial habitat (42) waste water (12)
| Organism Name | Location | Depth | Date Sampled | EnvO-Lite | TaxID | Genome PID |
|---|---|---|---|---|---|---|
| Escherichia coli TW14588 | NA | NA | NA | plant-associated habitat | 502346 | 28847 |
| Herbaspirillum seropedicae Z67 | NA | NA | NA | plant-associated habitat | 964 | 15704 |
| Cupriavidus LMG19424 | NA | NA | NA | plant-associated habitat | 164546 | 15733 |
| Acidovorax avenae AAC00-1 | NA | NA | NA | plant-associated habitat | 397945 | 15708 |
| Rickettsia slovaca 13-B | NA | NA | NA | plant-associated habitat | 35794 | 15712 |
| Bradyrhizobium sp. BTAi1 | NA | NA | NA | plant-associated habitat | 288000 | 16137 |
| Xanthomonas oryzae MAFF 311018 | NA | NA | NA | plant-associated habitat | 342109 | 16297 |
| Xanthomonas albilineans GPE PC73 | NA | NA | NA | plant-associated habitat | 380358 | 16687 |
| Xanthomonas oryzae BLS256 | NA | NA | NA | plant-associated habitat | 383407 | 16740 |
| Xylella fastidiosa Temecula1 | NA | NA | NA | plant-associated habitat | 183190 | 285 |
| Pseudomonas stutzeri A1501 | NA | NA | NA | plant-associated habitat | 379731 | 16817 |
| Pseudomonas putida W619 | NA | NA | NA | plant-associated habitat | 390235 | 17053 |
| Agrobacterium tumefaciens C58-Cereon | NA | NA | NA | plant-associated habitat | 176299 | 283 |
| Frankia alni ACN14a | NA | NA | NA | plant-associated habitat | 326424 | 17403 |
| Burkholderia phymatum STM815 | NA | NA | NA | plant-associated habitat | 391038 | 17409 |
| Enterobacter sp. 638 | NA | NA | NA | plant-associated habitat | 399742 | 17461 |
| Burkholderia phytofirmans PsJN | NA | NA | NA | plant-associated habitat | 398527 | 17463 |
| Rhizobium etli CIAT 652 | NA | NA | NA | plant-associated habitat | 491916 | 28021 |
| Clostridium thermocellum JW20 | NA | NA | NA | plant-associated habitat | 492476 | 28257 |
| Rhizobium leguminosarum WSM1325 | NA | NA | NA | plant-associated habitat | 395491 | 20097 |
| Xylella fastidiosa M12 | NA | NA | NA | plant-associated habitat | 405440 | 17823 |
| Clavibacter michiganensis ATCC 33113 | NA | NA | NA | plant-associated habitat | 31964 | 184 |
| Error!!! error!!! M23 | NA | NA | NA | plant-associated habitat | 405441 | 18457 |
| Xylella fastidiosa 8.1.b clone 9.a.5.c | NA | NA | NA | plant-associated habitat | 160492 | 271 |
| Xylella fastidiosa Dixon | NA | NA | NA | plant-associated habitat | 155919 | 260 |
| Xylella fastidiosa Ann-1 | NA | NA | NA | plant-associated habitat | 155920 | 261 |
| Methylobacterium extorquens PA1 | NA | NA | NA | plant-associated habitat | 419610 | 18637 |
| Methylobacterium radiotolerans JCM 2831 | NA | NA | NA | plant-associated habitat | 426355 | 18817 |
| Xanthomonas axonopodis 10535 | NA | NA | NA | plant-associated habitat | 427082 | 18835 |
| Xanthomonas axonopodis 11122 | NA | NA | NA | plant-associated habitat | 427081 | 18837 |
| Lactobacillus fermentum IFO 3956 | NA | NA | NA | plant-associated habitat | 334390 | 18979 |
| Rhizobium leguminosarum WSM2304 | NA | NA | NA | plant-associated habitat | 395492 | 20179 |
| Candidatus Phytoplasma AT | NA | NA | NA | plant-associated habitat | 37692 | 25335 |
| Leifsonia xyli CTCB07 | NA | NA | NA | plant-associated habitat | 281090 | 212 |
| Azorhizobium caulinodans ORS 571 | NA | NA | NA | plant-associated habitat | 438753 | 19267 |
| Methylobacterium nodulans ORS2060 | NA | NA | NA | plant-associated habitat | 460265 | 20477 |
| Burkholderia graminis C4D1M | NA | NA | NA | plant-associated habitat | 396598 | 20537 |
| Erwinia Et1/99 | NA | NA | NA | plant-associated habitat | 338565 | 20585 |
| Dyadobacter fermentans NS 114, DSM 18053 | NA | NA | NA | plant-associated habitat | 471854 | 20829 |
| Bradyrhizobium japonicum SEMIA 5079 | NA | NA | NA | plant-associated habitat | 476282 | 20963 |
| Rhizobium NGR234 (ANU265) | NA | NA | NA | plant-associated habitat | 394 | 21101 |
| Burkholderia ambifaria IOP40-10 | NA | NA | NA | plant-associated habitat | 396596 | 20669 |
| Burkholderia ambifaria MEX-5 | NA | NA | NA | plant-associated habitat | 396597 | 20667 |
| Pediococcus pentosaceus ATCC 25745 | NA | NA | NA | plant-associated habitat | 278197 | 398 |
| Pseudomonas savastanoi 1448A / Race 6 | NA | NA | NA | plant-associated habitat | 264730 | 12416 |
| Pseudomonas fluorescens SBW25 | NA | NA | NA | plant-associated habitat | 216595 | 343 |
| Pectobacterium atrosepticum SCRI1043 | NA | NA | NA | plant-associated habitat | 218491 | 350 |
| Gluconacetobacter diazotrophicus PAL5 | NA | NA | NA | plant-associated habitat | 272568 | 377 |
| Pseudomonas syringae group genomosp. 3 DC3000 | NA | NA | NA | plant-associated habitat | 223283 | 359 |
| Rhizobium leguminosarum 3841 | NA | NA | NA | plant-associated habitat | 216596 | 344 |
| Pseudomonas fluorescens Pf-5 | NA | NA | NA | plant-associated habitat | 220664 | 327 |
| Pseudomonas syringae B728a | NA | NA | NA | plant-associated habitat | 205918 | 323 |
| Erwinia amylovora Ea273 | NA | NA | NA | plant-associated habitat | 552 | 12610 |
| Dickeya erwinia chrysanthemi 3937 | NA | NA | NA | plant-associated habitat | 198628 | 30 |
| Xanthomonas oryzae KACC10331 | NA | NA | NA | plant-associated habitat | 291331 | 12931 |
| Azoarcus sp. BH72 | NA | NA | NA | plant-associated habitat | 62928 | 13217 |
| Azospirillum brasilense | NA | NA | NA | plant-associated habitat | 192 | 13216 |
| Xanthomonas axonopodis XV101, 306 | NA | NA | NA | plant-associated habitat | 190486 | 297 |
| Mesoplasma florum L1 | NA | NA | NA | plant-associated habitat | 265311 | 10650 |
| Agrobacterium vitis biovar III, S4 | NA | NA | NA | plant-associated habitat | 311402 | 13372 |
| Burkholderia glumae | NA | NA | NA | plant-associated habitat | 337 | 13405 |
| Burkholderia ambifaria AMMD | NA | NA | NA | plant-associated habitat | 339670 | 13490 |
| Rhizobium etli Kim 5 | NA | NA | NA | plant-associated habitat | 526950 | 29555 |
| Rhizobium etli 8C-3 | NA | NA | NA | plant-associated habitat | 538025 | 29559 |
| Rhizobium etli Brasil 5 | NA | NA | NA | plant-associated habitat | 526949 | 29557 |
| Rhizobium etli GR56 | NA | NA | NA | plant-associated habitat | 526947 | 29561 |
| Rhizobium etli IE4771 | NA | NA | NA | plant-associated habitat | 526946 | 29563 |
| Rhizobium etli CIAT 894 | NA | NA | NA | plant-associated habitat | 526945 | 29565 |
| Agrobacterium tumefaciens biovar II K84 | NA | NA | NA | plant-associated habitat | 311403 | 13402 |
| Rhizobium tropici PRF 81 | NA | NA | NA | plant-associated habitat | 363754 | 13459 |
| Spiroplasma citri | NA | NA | NA | plant-associated habitat | 2133 | 13401 |
| Listeria grayi CLIP12515 | NA | NA | NA | plant-associated habitat | 1641 | 13440 |
| Candidatus Phytoplasma | NA | NA | NA | plant-associated habitat | 59748 | 29469 |
| Rhizobium etli CFN42 | NA | NA | NA | plant-associated habitat | 347834 | 13932 |
| Xanthomonas euvesicatoria 85-10 | NA | NA | NA | plant-associated habitat | 316273 | 13649 |
| Xanthomonas campestris 8004 | NA | NA | NA | plant-associated habitat | 314565 | 15 |
| Frankia sp. CcI3 | NA | NA | NA | plant-associated habitat | 106370 | 13963 |
| Burkholderia sp. H160 | NA | NA | NA | plant-associated habitat | 516466 | 29197 |
| Candidatus Phytoplasma onion yellows phytoplasma OY-M | NA | NA | NA | plant-associated habitat | 262768 | 9615 |
| Bradyrhizobium sp. ORS278 | NA | NA | NA | plant-associated habitat | 114615 | 19575 |
| Methylobacterium populi BJ001 | NA | NA | NA | plant-associated habitat | 441620 | 19559 |
| Clavibacter michiganensis NCPPB 382 | NA | NA | NA | plant-associated habitat | 443906 | 19643 |
| Pseudomonas syringae group genomosp. 3 T1 | NA | NA | NA | plant-associated habitat | 323 | 19697 |
| Bradyrhizobium japonicum USDA110 | NA | NA | NA | plant-associated habitat | 224911 | 17 |
| Mesorhizobium loti MAFF303099 | NA | NA | NA | plant-associated habitat | 266835 | 18 |
| Spiroplasma kunkelii CR2-3x | NA | NA | NA | plant-associated habitat | 273035 | 203 |
| Xanthomonas campestris ATCC 33913 | NA | NA | NA | plant-associated habitat | 190485 | 296 |
| Stenotrophomonas maltophilia R551-3 | NA | NA | NA | plant-associated habitat | 391008 | 17107 |
| Candidatus Phytoplasma aster yellows witches'-broom phytoplasma AY-WB | NA | NA | NA | plant-associated habitat | 322098 | 13478 |
| Stigmatella aurantiaca DW4/3-1 | NA | NA | NA | plant-associated habitat | 378806 | 15671 |
