genomes
overview
Browse genomes by isolation enviroment
Click a Location to retrieve environmental data
We manually annotate the genome collection with EnvO-Lite terms to offer users further comparative perspectives. The tag-cloud below can be used to sort genomes by EnvO-Lite annotations. Clicking on coordinates in the "Location" column will access environmental data via our mapserver. See our Annotation Overview for more details.
Please note that "marine habitat" refers to marine water!
unclassified (11) air (1) animal-associated habitat (876) aquatic habitat (43) cultured habitat (38) extreme habitat (21) food (62) freshwater habitat (28) hot spring (61) hydrothermal vent (27) marine habitat (227) organism-associated habitat (21) plant-associated habitat (90) sediment (85) sludge (17) soil (171) terrestrial habitat (42) waste water (12)
| Organism Name | Location | Depth | Date Sampled | EnvO-Lite | TaxID | Genome PID |
|---|---|---|---|---|---|---|
| Escherichia coli BL21(DE3) | NA | NA | NA | cultured habitat | 469008 | 20713 |
| Escherichia coli ATCC 8739 | NA | NA | NA | cultured habitat | 481805 | 18083 |
| Escherichia coli LW1655F+ | NA | NA | NA | cultured habitat | 527799 | 29609 |
| Brucella abortus 2308 | NA | NA | NA | cultured habitat | 359391 | 16203 |
| Mycoplasma pulmonis UAB CTIP | NA | NA | NA | cultured habitat | 272635 | 100 |
| Listeria monocytogenes EGD-e | NA | NA | NA | cultured habitat | 169963 | 276 |
| Francisella tularensis LVS | NA | NA | NA | cultured habitat | 119857 | 16421 |
| Bacillus anthracis Sterne | NA | NA | NA | cultured habitat | 260799 | 10878 |
| Francisella tularensis ATCC6223 | NA | NA | NA | cultured habitat | 491120 | 30629 |
| Leptospirillum ferrooxidans ATCC 53993 | NA | NA | NA | cultured habitat | 380394 | 16689 |
| Clostridium novyi NT | NA | NA | NA | cultured habitat | 386415 | 16820 |
| Clostridium tetani Massachusetts E88 | NA | NA | NA | cultured habitat | 212717 | 81 |
| Mycobacterium bovis Pasteur 1173P2 | NA | NA | NA | cultured habitat | 410289 | 18059 |
| Mycobacterium bovis Moreau RDJ | NA | NA | NA | cultured habitat | 413996 | 18279 |
| Streptococcus pneumoniae R6 | NA | NA | NA | cultured habitat | 171101 | 278 |
| Lactobacillus delbrueckii ATCC BAA-365 | NA | NA | NA | cultured habitat | 321956 | 403 |
| Haemophilus ducreyi 35000HP | NA | NA | NA | cultured habitat | 233412 | 38 |
| Klebsiella oxytoca VJSK009 | NA | NA | NA | cultured habitat | 290337 | 12627 |
| Salmonella typhimurium SL1344 | NA | NA | NA | cultured habitat | 216597 | 345 |
| Salmonella enterica Typhi Ty21a | NA | NA | NA | cultured habitat | 527001 | 29739 |
| Staphylococcus aureus NCTC 8325 | NA | NA | NA | cultured habitat | 93061 | 237 |
| Clostridium botulinum BoNT/A1 ATCC 19397 | NA | NA | NA | cultured habitat | 441770 | 19517 |
| Vibrio cholerae MAK757 | NA | NA | NA | cultured habitat | 412967 | 18263 |
| Bacillus thuringiensis Bt407 | NA | NA | NA | cultured habitat | 527021 | 29717 |
| Bordetella avium 197N | NA | NA | NA | cultured habitat | 360910 | 27 |
| Streptomyces coelicolor A3(2) M145 | NA | NA | NA | cultured habitat | 100226 | 242 |
| Sinorhizobium meliloti 1021 | NA | NA | NA | cultured habitat | 266834 | 19 |
| Bacillus subtilis 168 | NA | NA | NA | cultured habitat | 224308 | 76 |
| Pseudomonas aeruginosa PAO1 | NA | NA | NA | cultured habitat | 208964 | 331 |
| Mycobacterium smegmatis MC2 155 | NA | NA | NA | cultured habitat | 246196 | 92 |
| Rhodobacter capsulatus SB1003 | NA | NA | NA | cultured habitat | 272942 | 55 |
| Salmonella enterica SL254 | NA | NA | NA | cultured habitat | 423368 | 18747 |
| Escherichia coli DH10B | NA | NA | NA | cultured habitat | 316385 | 20079 |
| Enterococcus OG1RF | NA | NA | NA | cultured habitat | 474186 | 20843 |
| Xanthomonas oryzae PXO99A | NA | NA | NA | cultured habitat | 360094 | 28127 |
| Mycoplasma mycoides GM12 | NA | NA | NA | cultured habitat | 436113 | 19245 |
| Pseudomonas aeruginosa PK6 | NA | NA | NA | cultured habitat | 419110 | 18571 |
| Acinetobacter sp. ADP1 | NA | NA | NA | cultured habitat | 62977 | 12352 |
