genomes
overview
Browse genomes by isolation enviroment
Click a Location to retrieve environmental data
We manually annotate the genome collection with EnvO-Lite terms to offer users further comparative perspectives. The tag-cloud below can be used to sort genomes by EnvO-Lite annotations. Clicking on coordinates in the "Location" column will access environmental data via our mapserver. See our Annotation Overview for more details.
Please note that "marine habitat" refers to marine water!
unclassified (11) air (1) animal-associated habitat (876) aquatic habitat (43) cultured habitat (38) extreme habitat (21) food (62) freshwater habitat (28) hot spring (61) hydrothermal vent (27) marine habitat (227) organism-associated habitat (21) plant-associated habitat (90) sediment (85) sludge (17) soil (171) terrestrial habitat (42) waste water (12)
| Organism Name | Location | Depth | Date Sampled | EnvO-Lite | TaxID | Genome PID |
|---|---|---|---|---|---|---|
| Listeria monocytogenes FSL J1-208 | NA | NA | NA | animal-associated habitat | 393119 | 17303 |
| Unclassified candidatus ruthia magnifica Cm | NA | NA | NA | animal-associated habitat | 413404 | 16841 |
| Brachybacterium faecium 6-10, DSM 4810 | NA | NA | NA | animal-associated habitat | 446465 | 17026 |
| Clostridium VPI 10463, ATCC 43255 | NA | NA | NA | animal-associated habitat | 499175 | 28559 |
| Listeria monocytogenes Italy 1997 | NA | NA | NA | animal-associated habitat | 393129 | 17323 |
| Escherichia coli F11 (ETEC) | NA | NA | NA | animal-associated habitat | 340197 | 15576 |
| Escherichia coli E110019 (EPEC) | NA | NA | NA | animal-associated habitat | 340186 | 15578 |
| Methanosphaera stadtmanae DSMZ3091 | NA | NA | NA | animal-associated habitat | 339860 | 15579 |
| Victivallis vadensis DSM 14823 | NA | NA | NA | animal-associated habitat | 340101 | 15583 |
| Staphylococcus saprophyticus GTC 265 | NA | NA | NA | animal-associated habitat | 342451 | 15596 |
| Escherichia albertii TW07627 | NA | NA | NA | animal-associated habitat | 502347 | 28851 |
| Escherichia coli E22 (EPEC) | NA | NA | NA | animal-associated habitat | 340185 | 15577 |
| Tropheryma whipplei Twist | NA | NA | NA | animal-associated habitat | 203267 | 95 |
| Escherichia coli B171 (EPEC2) | NA | NA | NA | animal-associated habitat | 344601 | 15630 |
| Mycobacterium avium 104 | NA | NA | NA | animal-associated habitat | 243243 | 88 |
| Mycobacterium bovis AF2122/97(spoligotype 9) | NA | NA | NA | animal-associated habitat | 233413 | 89 |
| Mycobacterium leprae TN | NA | NA | NA | animal-associated habitat | 272631 | 90 |
| Mycobacterium avium K-10 | NA | NA | NA | animal-associated habitat | 262316 | 91 |
| Mycobacterium tuberculosis F11 (ExPEC) | NA | NA | NA | animal-associated habitat | 336982 | 15642 |
| Vibrio cholerae V52 | NA | NA | NA | animal-associated habitat | 345076 | 15670 |
| Vibrio cholerae V51 | NA | NA | NA | animal-associated habitat | 345075 | 15669 |
| Mycobacterium CIP 104536 | NA | NA | NA | animal-associated habitat | 36809 | 15691 |
| Staphylococcus aureus JH9 VISA | NA | NA | NA | animal-associated habitat | 359786 | 15757 |
| Lactobacillus reuteri DSM 20016 | NA | NA | NA | animal-associated habitat | 557436 | 15766 |
| Yersinia pseudotuberculosis IP 31758 | NA | NA | NA | animal-associated habitat | 349747 | 16070 |
| Francisella tularensis FSC200 | NA | NA | NA | animal-associated habitat | 351581 | 16087 |
| Clostridium nexile DSM 1787 | NA | NA | NA | animal-associated habitat | 500632 | 28659 |
| Edwardsiella tarda ATCC 23685 | NA | NA | NA | animal-associated habitat | 500638 | 28661 |
| Enterobacter cancerogenus ATCC 35316 | NA | NA | NA | animal-associated habitat | 500639 | 28663 |
| Citrobacter ATCC 29220 | NA | NA | NA | animal-associated habitat | 500640 | 28665 |
| Salmonella enterica ATCC BAA-1585 | NA | NA | NA | animal-associated habitat | 523829 | 28765 |
| Yersinia pestis KIM10+ | NA | NA | NA | animal-associated habitat | 187410 | 288 |
| Escherichia coli 53638 | NA | NA | NA | animal-associated habitat | 344610 | 15639 |
| Bacillus coagulans 36D1 | NA | NA | NA | animal-associated habitat | 345219 | 15679 |
| Bifidobacterium animalis HN019 | NA | NA | NA | animal-associated habitat | 486409 | 28807 |
| Bacillus cereus G9241 | NA | NA | NA | animal-associated habitat | 269801 | 10788 |
| Mycoplasma mycoides PG1T | NA | NA | NA | animal-associated habitat | 272632 | 10616 |
| Pseudomonas aeruginosa PAb1 | NA | NA | NA | animal-associated habitat | 509633 | 28809 |
| Prevotella ruminicola 23 | NA | NA | NA | animal-associated habitat | 264731 | 10619 |
| Salmonella enterica ATCC BAA-1579 | NA | NA | NA | animal-associated habitat | 523839 | 28783 |
| Salmonella enterica ATCC BAA-1575 | NA | NA | NA | animal-associated habitat | 523828 | 28787 |
| Salmonella enterica ATCC BAA-1578 | NA | NA | NA | animal-associated habitat | 523834 | 28773 |
| Salmonella enterica ATCC BAA-1576 | NA | NA | NA | animal-associated habitat | 523835 | 28785 |
| Salmonella enterica ATCC BAA-1583 | NA | NA | NA | animal-associated habitat | 523837 | 28779 |
| Salmonella enterica ATCC BAA-1577 | NA | NA | NA | animal-associated habitat | 523833 | 28771 |
| Salmonella enterica ATCC BAA-1586 | NA | NA | NA | animal-associated habitat | 523836 | 28775 |
| Mycobacterium chelonae CIP 104535 | NA | NA | NA | animal-associated habitat | 1774 | 15692 |
| Salmonella enterica ATCC BAA-1581 | NA | NA | NA | animal-associated habitat | 523831 | 28767 |
| Yersinia YPIII | NA | NA | NA | animal-associated habitat | 502800 | 28743 |
| Salmonella enterica ATCC BAA-1580 | NA | NA | NA | animal-associated habitat | 523832 | 28769 |
| Yersinia pestis Angola | NA | NA | NA | animal-associated habitat | 349746 | 16067 |
| Yersinia pseudotuberculosis PB1/+ | NA | NA | NA | animal-associated habitat | 502801 | 28745 |
| Mycoplasma agalactiae 5632 | NA | NA | NA | animal-associated habitat | 347258 | 16096 |
| Listeria monocytogenes F2365 (cheese isolate) | NA | NA | NA | animal-associated habitat | 265669 | 85 |
| Bartonella tribocorum CIP 105476 | NA | NA | NA | animal-associated habitat | 85701 | 16098 |
| Yersinia bercovieri ATCC 43970 | NA | NA | NA | animal-associated habitat | 349968 | 16104 |
| Yersinia intermedia ATCC 29909 | NA | NA | NA | animal-associated habitat | 349965 | 16107 |
| Campylobacter jejuni 81-176 | NA | NA | NA | animal-associated habitat | 354242 | 16135 |
| Leptospira borgpetersenii L550 | NA | NA | NA | animal-associated habitat | 355276 | 16146 |
| Burkholderia dolosa AUO158 | NA | NA | NA | animal-associated habitat | 350701 | 16168 |
| Burkholderia cenocepacia PC184 | NA | NA | NA | animal-associated habitat | 350702 | 16169 |
| Campylobacter jejuni 260.94 | NA | NA | NA | animal-associated habitat | 360108 | 16229 |
| Pseudomonas aeruginosa 2192 | NA | NA | NA | animal-associated habitat | 350703 | 16171 |
| Pseudomonas aeruginosa C3719 | NA | NA | NA | animal-associated habitat | 350704 | 16170 |
| Orientia tsutsugamushi Boryong | NA | NA | NA | animal-associated habitat | 357244 | 16180 |
| Helicobacter pylori HPAG1 | NA | NA | NA | animal-associated habitat | 357544 | 16183 |
| Escherichia coli 101-1 | NA | NA | NA | animal-associated habitat | 358709 | 16193 |
| Shigella dysenteriae 1012 | NA | NA | NA | animal-associated habitat | 358708 | 16194 |
| Chlamydophila Mat116 | NA | NA | NA | animal-associated habitat | 500464 | 28637 |
| Burkholderia pseudomallei 406e | NA | NA | NA | animal-associated habitat | 360118 | 16231 |
| Escherichia coli UPEC-536 | NA | NA | NA | animal-associated habitat | 362663 | 16235 |
| Escherichia coli UTI89 | NA | NA | NA | animal-associated habitat | 364106 | 16259 |
| Campylobacter jejuni CF93-6 | NA | NA | NA | animal-associated habitat | 360111 | 16265 |
| Campylobacter jejuni HB93-13 | NA | NA | NA | animal-associated habitat | 360112 | 16267 |
| Campylobacter fetus 82-40 | NA | NA | NA | animal-associated habitat | 360106 | 16293 |
| Brevibacillus sp. PNG 276 | NA | NA | NA | animal-associated habitat | 365043 | 16295 |
| Borrelia burgdorferi 80a | NA | NA | NA | animal-associated habitat | 498736 | 28623 |
| Borrelia garinii PBr | NA | NA | NA | animal-associated habitat | 498743 | 28625 |
| Borrelia burgdorferi WI91-23 | NA | NA | NA | animal-associated habitat | 498737 | 28627 |
| Borrelia burgdorferi CA-11.2a | NA | NA | NA | animal-associated habitat | 498739 | 28629 |
| Borrelia sp. SV1 | NA | NA | NA | animal-associated habitat | 498741 | 28631 |
| Borrelia burgdorferi 64b | NA | NA | NA | animal-associated habitat | 498740 | 28633 |
| Borrelia spielmanii A14S | NA | NA | NA | animal-associated habitat | 498742 | 28635 |
| Providencia DSM 4541 | NA | NA | NA | animal-associated habitat | 500637 | 28651 |
| Mitsuokella A 405-1, DSM 20544 | NA | NA | NA | animal-associated habitat | 500635 | 28653 |
| Bifidobacterium DSM 20456 | NA | NA | NA | animal-associated habitat | 500634 | 28655 |
| Lactobacillus gasseri ATCC 33323 | NA | NA | NA | animal-associated habitat | 324831 | 84 |
| Ureaplasma parvum ATCC700970, serovar 3 | NA | NA | NA | animal-associated habitat | 273119 | 101 |
| Bartonella bacilliformis KC583 | NA | NA | NA | animal-associated habitat | 360095 | 16249 |
| Yersinia frederiksenii ATCC 33641 | NA | NA | NA | animal-associated habitat | 349966 | 16106 |
| Leptospira borgpetersenii JB197 | NA | NA | NA | animal-associated habitat | 355277 | 16148 |
| Candidatus Sulcia candidatus sulcia muelleri Hc | NA | NA | NA | animal-associated habitat | 374675 | 16198 |
| Mycoplasma capricolum California kid ATCC 27343 | NA | NA | NA | animal-associated habitat | 340047 | 16208 |
| Sodalis glossinidius morsitans | NA | NA | NA | animal-associated habitat | 343509 | 16309 |
| Staphylococcus aureus MRSA USA300, FPR3757 | NA | NA | NA | animal-associated habitat | 367830 | 16313 |
| Bacillus thuringiensis 97-27 | NA | NA | NA | animal-associated habitat | 281309 | 10877 |
| Clostridium difficile QCD-32g58 | NA | NA | NA | animal-associated habitat | 367459 | 16328 |
| Arcobacter butzleri RM4018 | NA | NA | NA | animal-associated habitat | 367737 | 16319 |
| Campylobacter jejuni 84-25 | NA | NA | NA | animal-associated habitat | 360110 | 16367 |
| Yersinia pestis IP275 | NA | NA | NA | animal-associated habitat | 373665 | 16376 |
| Haemophilus influenzae PittDD | NA | NA | NA | animal-associated habitat | 374834 | 16392 |
| Haemophilus influenzae 3655 | NA | NA | NA | animal-associated habitat | 375177 | 16395 |
| Haemophilus influenzae 22.4-21, ST165 | NA | NA | NA | animal-associated habitat | 375432 | 16396 |
| Haemophilus influenzae 22.1-21, ST176 | NA | NA | NA | animal-associated habitat | 374927 | 16398 |
| Haemophilus influenzae PittAA | NA | NA | NA | animal-associated habitat | 374928 | 16399 |
| Haemophilus influenzae PittEE | NA | NA | NA | animal-associated habitat | 374930 | 16400 |
| Haemophilus influenzae PittGG | NA | NA | NA | animal-associated habitat | 374931 | 16401 |
| Haemophilus influenzae PittBB | NA | NA | NA | animal-associated habitat | 374929 | 16402 |
| Haemophilus influenzae PittHH | NA | NA | NA | animal-associated habitat | 374932 | 16403 |
| Haemophilus influenzae PittII | NA | NA | NA | animal-associated habitat | 374933 | 16404 |
| Haemophilus influenzae R3021 | NA | NA | NA | animal-associated habitat | 375063 | 16423 |
| Escherichia coli APEC | NA | NA | NA | animal-associated habitat | 405955 | 16718 |
| Pseudomonas aeruginosa PA7 | NA | NA | NA | animal-associated habitat | 381754 | 16720 |
| Coxiella burnetii Dugway 5J108-111 | NA | NA | NA | animal-associated habitat | 434922 | 16721 |
| Aeromonas salmonicida A449 | NA | NA | NA | animal-associated habitat | 382245 | 16723 |
| Mycobacterium marinum M | NA | NA | NA | animal-associated habitat | 216594 | 16725 |
| Pseudomonas aeruginosa OPPA8 | NA | NA | NA | animal-associated habitat | 497979 | 28527 |
| Endoriftia persephone Hot96_1+Hot96_2 | NA | NA | NA | animal-associated habitat | 394104 | 16744 |
| Helicobacter pylori HPKX_438_AG0C1 | NA | NA | NA | animal-associated habitat | 499171 | 28543 |
| Helicobacter pylori HPKX_438_CA4C1 | NA | NA | NA | animal-associated habitat | 499172 | 28545 |
| Clostridium difficile QCD-23m63 | NA | NA | NA | animal-associated habitat | 499174 | 28557 |
| Clostridium difficile CIP 107932 | NA | NA | NA | animal-associated habitat | 499176 | 28561 |
| Chlamydia trachomatis L2b/UCH-1/proctitis | NA | NA | NA | animal-associated habitat | 471473 | 28585 |
| Bifidobacterium adolescentis ATCC 15703 | NA | NA | NA | animal-associated habitat | 367928 | 16321 |
| Streptococcus pyogenes M18 MGAS8232 | NA | NA | NA | animal-associated habitat | 186103 | 286 |
| Streptococcus pneumoniae D39 | NA | NA | NA | animal-associated habitat | 373153 | 16374 |
| Edwardsiella tarda EIB202 | NA | NA | NA | animal-associated habitat | 498217 | 28539 |
| Neisseria meningitidis 053442 | NA | NA | NA | animal-associated habitat | 374833 | 16393 |
| Burkholderia mallei 2002721280 | NA | NA | NA | animal-associated habitat | 370895 | 16352 |
| Borrelia burgdorferi 29805 | NA | NA | NA | animal-associated habitat | 498738 | 28621 |
| Buchnera aphidicola Cc | NA | NA | NA | animal-associated habitat | 372461 | 16372 |
| Chlamydia trachomatis 434/Bu | NA | NA | NA | animal-associated habitat | 471472 | 28583 |
| Shigella flexneri 8401 | NA | NA | NA | animal-associated habitat | 373384 | 16375 |
| Yersinia pestis FV-1 | NA | NA | NA | animal-associated habitat | 375450 | 16429 |
| Yersinia pestis Pestoides F | NA | NA | NA | animal-associated habitat | 386656 | 16700 |
| Rickettsiella grylli | NA | NA | NA | animal-associated habitat | 59196 | 16722 |
| Burkholderia mallei ATCC 23344 | NA | NA | NA | animal-associated habitat | 243160 | 171 |
| Coxiella burnetii RSA 331 | NA | NA | NA | animal-associated habitat | 360115 | 16791 |
| Pseudomonas aeruginosa PACS2 | NA | NA | NA | animal-associated habitat | 388272 | 16851 |
| Campylobacter jejuni CG8486 | NA | NA | NA | animal-associated habitat | 398000 | 17055 |
| Borrelia afzelii PKo | NA | NA | NA | animal-associated habitat | 390236 | 17057 |
| Streptococcus suis 05ZYH33 | NA | NA | NA | animal-associated habitat | 391295 | 17153 |
| Streptococcus suis 98HAH33 | NA | NA | NA | animal-associated habitat | 391296 | 17155 |
| Campylobacter concisus 13826 | NA | NA | NA | animal-associated habitat | 360104 | 17159 |
| Campylobacter curvus 525.92 | NA | NA | NA | animal-associated habitat | 360105 | 17161 |
| Campylobacter jejuni 269.97 | NA | NA | NA | animal-associated habitat | 360109 | 17163 |
| Verminephrobacter eiseniae EF01-2 | NA | NA | NA | animal-associated habitat | 391735 | 17187 |
| Bifidobacterium longum ATCC 15697 | NA | NA | NA | animal-associated habitat | 391904 | 17189 |
| Rickettsia bellii OSU 85-389 | NA | NA | NA | animal-associated habitat | 391896 | 17237 |
| Thermosipho melanesiensis BI429 | NA | NA | NA | animal-associated habitat | 391009 | 17249 |
| Listeria monocytogenes FSL R2-503 | NA | NA | NA | animal-associated habitat | 393125 | 17315 |
| Listeria monocytogenes FSL J1-194 | NA | NA | NA | animal-associated habitat | 393117 | 17299 |
| Salmonella enterica E98-2068 | NA | NA | NA | animal-associated habitat | 496068 | 28301 |
| Salmonella enterica J185 | NA | NA | NA | animal-associated habitat | 496067 | 28303 |
| Salmonella enterica AG3 | NA | NA | NA | animal-associated habitat | 496065 | 28307 |
| Salmonella enterica E98-3139 | NA | NA | NA | animal-associated habitat | 496064 | 28309 |
| Streptococcus pneumoniae SP9v-BS293 | NA | NA | NA | animal-associated habitat | 497963 | 28513 |
| Streptococcus pneumoniae 459-2 | NA | NA | NA | animal-associated habitat | 497981 | 28523 |
| Streptococcus pneumoniae 459-5 | NA | NA | NA | animal-associated habitat | 497980 | 28525 |
| Pseudomonas entomophila L48 | NA | NA | NA | animal-associated habitat | 384676 | 16800 |
| Fusobacterium nucleatum ATCC 10953 | NA | NA | NA | animal-associated habitat | 393480 | 17261 |
| Moraxella bovis Epp63 | NA | NA | NA | animal-associated habitat | 387425 | 16829 |
| Mycobacterium tuberculosis Haarlem | NA | NA | NA | animal-associated habitat | 395095 | 17353 |
| Helicobacter acinonychis Sheeba | NA | NA | NA | animal-associated habitat | 382638 | 17251 |
| Francisella tularensis OSU18 | NA | NA | NA | animal-associated habitat | 393011 | 17265 |
| Salmonella enterica M223 | NA | NA | NA | animal-associated habitat | 496066 | 28305 |
| Haemophilus influenzae 86-028NP | NA | NA | NA | animal-associated habitat | 281310 | 11752 |
| Francisella tularensis FSC 198 | NA | NA | NA | animal-associated habitat | 393115 | 17375 |
| Burkholderia ambifaria MC40-6 | NA | NA | NA | animal-associated habitat | 398577 | 17411 |
| Acinetobacter baumannii ATCC 17978 | NA | NA | NA | animal-associated habitat | 400667 | 17477 |
| Legionella pneumophila Corby | NA | NA | NA | animal-associated habitat | 400673 | 17491 |
| Listeria monocytogenes 10403S | NA | NA | NA | animal-associated habitat | 393133 | 17495 |
| Listeria monocytogenes HPB2262 | NA | NA | NA | animal-associated habitat | 401650 | 17597 |
| Yersinia pestis F1991016 | NA | NA | NA | animal-associated habitat | 404214 | 17681 |
| Yersinia pestis E1979001 | NA | NA | NA | animal-associated habitat | 360099 | 17683 |
| Yersinia pestis B42003004 | NA | NA | NA | animal-associated habitat | 404215 | 17685 |
| Yersinia pestis K1973002 | NA | NA | NA | animal-associated habitat | 404216 | 17687 |
| Yersinia pestis MG05-1020 | NA | NA | NA | animal-associated habitat | 404217 | 17689 |
| Yersinia pestis UG05-0454 | NA | NA | NA | animal-associated habitat | 404218 | 17691 |
| Bacillus cereus AH820 | NA | NA | NA | animal-associated habitat | 405535 | 17711 |
| Bacillus cereus AH187 (F4810/72) | NA | NA | NA | animal-associated habitat | 405534 | 17715 |
| Bacillus cereus AH1134 | NA | NA | NA | animal-associated habitat | 405533 | 17719 |
| Vibrio cholerae AM-19226 | NA | NA | NA | animal-associated habitat | 404974 | 17723 |
| Bacillus cereus B4264 (2002734361) | NA | NA | NA | animal-associated habitat | 405532 | 17731 |
| Bacillus cereus G9842 | NA | NA | NA | animal-associated habitat | 405531 | 17733 |
| Mycobacterium intracellulare ATCC 13950 | NA | NA | NA | animal-associated habitat | 487521 | 27955 |
| Salmonella enterica E01-6750 | NA | NA | NA | animal-associated habitat | 497975 | 28293 |
| Salmonella enterica E98-0664 | NA | NA | NA | animal-associated habitat | 497973 | 28299 |
| Clostridium difficile 630 (epidemic type X) | NA | NA | NA | animal-associated habitat | 272563 | 78 |
| Salmonella typhimurium TR7095 | NA | NA | NA | animal-associated habitat | 178328 | 280 |
| Mycoplasma penetrans HF-2 | NA | NA | NA | animal-associated habitat | 272633 | 176 |
| Streptococcus pneumoniae Taiwan19F-14 | NA | NA | NA | animal-associated habitat | 487213 | 28037 |
| Streptococcus pneumoniae JJA | NA | NA | NA | animal-associated habitat | 488222 | 28039 |
| Streptococcus pneumoniae 70585 | NA | NA | NA | animal-associated habitat | 488221 | 28043 |
| Serratia proteamaculans 568 | NA | NA | NA | animal-associated habitat | 399741 | 17459 |
| Bifidobacterium dentium Bd1 | NA | NA | NA | animal-associated habitat | 401473 | 17583 |
| Bacillus anthracis Tsiankovskii-I | NA | NA | NA | animal-associated habitat | 405536 | 17709 |
| Coxiella burnetii MSU Goat Q177 | NA | NA | NA | animal-associated habitat | 360116 | 17747 |
| Escherichia coli F18+ | NA | NA | NA | animal-associated habitat | 488477 | 28061 |
| Salmonella enterica E02-1180 | NA | NA | NA | animal-associated habitat | 497974 | 28295 |
| Streptococcus pneumoniae Hungary 19A-6 | NA | NA | NA | animal-associated habitat | 487214 | 28035 |
| Brucella melitensis 16M | NA | NA | NA | animal-associated habitat | 224914 | 180 |
| Streptococcus pneumoniae SP14-BS69 | NA | NA | NA | animal-associated habitat | 406560 | 17965 |
| Streptococcus pneumoniae SP18-BS74 | NA | NA | NA | animal-associated habitat | 406561 | 17967 |
| Streptococcus pneumoniae SP19-BS75 | NA | NA | NA | animal-associated habitat | 406562 | 17969 |
| Streptococcus pneumoniae SP23-BS72 | NA | NA | NA | animal-associated habitat | 406563 | 17971 |
| Haemophilus influenzae PittCC | NA | NA | NA | animal-associated habitat | 410252 | 18099 |
| Haemophilus influenzae PittFF | NA | NA | NA | animal-associated habitat | 410253 | 18101 |
| Haemophilus influenzae PittJJ | NA | NA | NA | animal-associated habitat | 410254 | 18103 |
| Borrelia afzelii K78 | NA | NA | NA | animal-associated habitat | 411555 | 18143 |
| Dorea formicigenerans ATCC 27755 | NA | NA | NA | animal-associated habitat | 411461 | 18155 |
| Dorea longicatena DSM 13814 | NA | NA | NA | animal-associated habitat | 411462 | 18157 |
| Eubacterium ventriosum ATCC 27560 | NA | NA | NA | animal-associated habitat | 411463 | 18159 |
| Bacteroides caccae ATCC 43185 | NA | NA | NA | animal-associated habitat | 411901 | 18163 |
| Clostridium bolteae ATCC BAA-613 | NA | NA | NA | animal-associated habitat | 411902 | 18165 |
| Actinomyces odontolyticus DSM 43331 | NA | NA | NA | animal-associated habitat | 411466 | 18171 |
| Bacteroides plebeius DSM 17135 | NA | NA | NA | animal-associated habitat | 484018 | 27829 |
| Bacteroides dorei DSM 17855 | NA | NA | NA | animal-associated habitat | 483217 | 27831 |
| Bacillus anthracis A0488, K4596 | NA | NA | NA | animal-associated habitat | 486624 | 27913 |
| Bacillus anthracis A0442, K88 | NA | NA | NA | animal-associated habitat | 486621 | 27915 |
| Bacillus anthracis A0465, LSU465; RA3; K2762 | NA | NA | NA | animal-associated habitat | 486620 | 27919 |
| Bacillus anthracis A0174, 74-412C-8; K1979 | NA | NA | NA | animal-associated habitat | 486622 | 27921 |
| Bacillus anthracis A0193, 96-10355; K1256 | NA | NA | NA | animal-associated habitat | 486619 | 27923 |
| Collinsella aerofaciens JCM 10188 | NA | NA | NA | animal-associated habitat | 411903 | 18167 |
| Staphylococcus epidermidis ATCC 12228 | NA | NA | NA | animal-associated habitat | 176280 | 279 |
| Candidatus Carsonella candidatus carsonella ruddii PV | NA | NA | NA | animal-associated habitat | 387662 | 17977 |
| Escherichia coli GZ-021210/cattle | NA | NA | NA | animal-associated habitat | 410290 | 18005 |
| Ruminococcus obeum ATCC 29174 | NA | NA | NA | animal-associated habitat | 411459 | 18147 |
| Ruminococcus torques ATCC 27756 | NA | NA | NA | animal-associated habitat | 411460 | 18153 |
| Peptostreptococcus micros ATCC 33270 | NA | NA | NA | animal-associated habitat | 411465 | 18169 |
| Lactobacillus helveticus DPC 4571 | NA | NA | NA | animal-associated habitat | 405566 | 17811 |
| Acinetobacter baumannii ACICU | NA | NA | NA | animal-associated habitat | 405416 | 17827 |
| Chlamydophila pneumoniae LPCoLN | NA | NA | NA | animal-associated habitat | 406984 | 17947 |
| Bacillus anthracis A0389, Bekasi; 89; K1938 | NA | NA | NA | animal-associated habitat | 486623 | 27917 |
| Bacteroides capillosus ATCC 29799 | NA | NA | NA | animal-associated habitat | 411467 | 18173 |
| Clostridium scindens ATCC 35704 | NA | NA | NA | animal-associated habitat | 411468 | 18175 |
| Eubacterium hallii DSM 3353 | NA | NA | NA | animal-associated habitat | 411469 | 18177 |
| Ruminococcus gnavus ATCC 29149 | NA | NA | NA | animal-associated habitat | 411470 | 18179 |
| subdoligranulum variabile DSM 15176 | NA | NA | NA | animal-associated habitat | 411471 | 18181 |
| Clostridium symbiosum ATCC 14940 | NA | NA | NA | animal-associated habitat | 411472 | 18183 |
| Ruminococcus callidus ATCC 27760 | NA | NA | NA | animal-associated habitat | 411473 | 18185 |
| Coprococcus eutactus ATCC 27759 | NA | NA | NA | animal-associated habitat | 411474 | 18187 |
| Eubacterium plautii ATCC 29863 | NA | NA | NA | animal-associated habitat | 411475 | 18189 |
| Bacteroides ovatus ATCC 8483 | NA | NA | NA | animal-associated habitat | 411476 | 18191 |
| Parabacteroides merdae ATCC 43184 | NA | NA | NA | animal-associated habitat | 411477 | 18193 |
| Bacteroides uniformis ATCC 8492 | NA | NA | NA | animal-associated habitat | 411479 | 18195 |
| Bifidobacterium adolescentis L2-32 | NA | NA | NA | animal-associated habitat | 411481 | 18197 |
| Faecalibacterium prausnitzii A2-165 | NA | NA | NA | animal-associated habitat | 411483 | 18199 |
| Clostridium sp. SS2/1 | NA | NA | NA | animal-associated habitat | 411484 | 18201 |
| Faecalibacterium prausnitzii M21/2 | NA | NA | NA | animal-associated habitat | 411485 | 18203 |
| Clostridium sp. M62/1 | NA | NA | NA | animal-associated habitat | 411486 | 18205 |
| Eubacterium sp. L2-7 | NA | NA | NA | animal-associated habitat | 411487 | 18207 |
| Clostridium sp. A2-232 | NA | NA | NA | animal-associated habitat | 411488 | 18209 |
| Clostridium sp. L2-50 | NA | NA | NA | animal-associated habitat | 411489 | 18211 |
| Anaerostipes caccae DSM 14662 | NA | NA | NA | animal-associated habitat | 411490 | 18213 |
| Borrelia duttonii Ly | NA | NA | NA | animal-associated habitat | 412419 | 18231 |
| Borrelia recurrentis A1 | NA | NA | NA | animal-associated habitat | 412418 | 18233 |
| Yersinia pestis CA88-4125 | NA | NA | NA | animal-associated habitat | 412420 | 18241 |
| Bacillus thuringiensis Al Hakam | NA | NA | NA | animal-associated habitat | 412694 | 18255 |
| Vibrio cholerae MZO-3 | NA | NA | NA | animal-associated habitat | 412883 | 18261 |
| Rickettsia africae ESF-5 | NA | NA | NA | animal-associated habitat | 347255 | 18269 |
| Rickettsia massiliae MTU5 | NA | NA | NA | animal-associated habitat | 416276 | 18271 |
| Unclassified opitutaceae bacterium tav2 TAV2 | NA | NA | NA | animal-associated habitat | 278957 | 18333 |
| Francisella tularensis A.II, Wyoming, WY96-3418 | NA | NA | NA | animal-associated habitat | 418136 | 18459 |
| Escherichia coli EC508 | NA | NA | NA | animal-associated habitat | 478007 | 27755 |
| Campylobacter jejuni BH-01-0142 | NA | NA | NA | animal-associated habitat | 482628 | 27797 |
| Salmonella enterica SPB7 | NA | NA | NA | animal-associated habitat | 272994 | 27803 |
| Methanobrevibacter smithii DSM 2375 | NA | NA | NA | animal-associated habitat | 483214 | 27821 |
| Bacteroides finegoldii DSM 17565 | NA | NA | NA | animal-associated habitat | 483215 | 27823 |
| Bacteroides eggerthii DSM 20697 | NA | NA | NA | animal-associated habitat | 483216 | 27827 |
| Lawsonia intracellularis PHE/MN1-00 | NA | NA | NA | animal-associated habitat | 363253 | 183 |
| Escherichia coli EC869 | NA | NA | NA | animal-associated habitat | 478008 | 27757 |
| Actinobacillus pleuropneumoniae L20 | NA | NA | NA | animal-associated habitat | 416269 | 18221 |
| Escherichia coli B REL606 | NA | NA | NA | animal-associated habitat | 413997 | 18281 |
| Francisella tularensis 257 | NA | NA | NA | animal-associated habitat | 412422 | 18251 |
| Vibrio cholerae 623-39 | NA | NA | NA | animal-associated habitat | 417397 | 18493 |
| Vibrio cholerae 1587 | NA | NA | NA | animal-associated habitat | 412966 | 18265 |
| Bordetella pertussis Tohama I | NA | NA | NA | animal-associated habitat | 257313 | 26 |
| Escherichia coli EDL933, EHEC | NA | NA | NA | animal-associated habitat | 155864 | 259 |
| Staphylococcus aureus N315 (MRSA) | NA | NA | NA | animal-associated habitat | 158879 | 264 |
| Streptococcus pyogenes GAS SF370 | NA | NA | NA | animal-associated habitat | 160490 | 269 |
| Streptococcus pyogenes Manfredo (M5) | NA | NA | NA | animal-associated habitat | 160491 | 270 |
| Mycobacterium tuberculosis 210 | NA | NA | NA | animal-associated habitat | 164513 | 273 |
| Streptococcus pneumoniae TIGR4 | NA | NA | NA | animal-associated habitat | 170187 | 277 |
| Vibrio cholerae MZO-2 | NA | NA | NA | animal-associated habitat | 417398 | 18495 |
| Vibrio cholerae NCTC 8457 | NA | NA | NA | animal-associated habitat | 417399 | 18497 |
| Vibrio parahaemolyticus AQ3810 | NA | NA | NA | animal-associated habitat | 419109 | 18601 |
| Burkholderia pseudomallei MSHR305 | NA | NA | NA | animal-associated habitat | 425067 | 18775 |
| Mycobacterium tuberculosis H37Ra | NA | NA | NA | animal-associated habitat | 419947 | 18883 |
| Eubacterium siraeum DSM 15702 | NA | NA | NA | animal-associated habitat | 428128 | 18921 |
| Clostridium leptum DSM 753 | NA | NA | NA | animal-associated habitat | 428125 | 18923 |
| clostridium spiroforme DSM 1552 | NA | NA | NA | animal-associated habitat | 428126 | 18925 |
| eubacterium dolichum DSM 3991 | NA | NA | NA | animal-associated habitat | 428127 | 18927 |
| Enterococcus faecium DO | NA | NA | NA | animal-associated habitat | 333849 | 71 |
| Staphylococcus aureus MRSA252 | NA | NA | NA | animal-associated habitat | 282458 | 265 |
| Wigglesworthia glossinidia P-endosymbiont | NA | NA | NA | animal-associated habitat | 36870 | 274 |
| Escherichia coli EC4045 | NA | NA | NA | animal-associated habitat | 444448 | 27733 |
| Escherichia coli EC4206 | NA | NA | NA | animal-associated habitat | 444447 | 27735 |
| Escherichia coli EC4042 | NA | NA | NA | animal-associated habitat | 444449 | 27737 |
| Escherichia coli EC4115 | NA | NA | NA | animal-associated habitat | 444450 | 27739 |
| Escherichia coli EC4196 | NA | NA | NA | animal-associated habitat | 444451 | 27741 |
| Escherichia coli EC4113 | NA | NA | NA | animal-associated habitat | 444452 | 27743 |
| Escherichia coli EC4076 | NA | NA | NA | animal-associated habitat | 444453 | 27745 |
| Escherichia coli EC4024 | NA | NA | NA | animal-associated habitat | 444454 | 27747 |
| Escherichia coli EC4401 | NA | NA | NA | animal-associated habitat | 478004 | 27749 |
| Escherichia coli EC4486 | NA | NA | NA | animal-associated habitat | 478005 | 27751 |
| Escherichia coli EC4501 | NA | NA | NA | animal-associated habitat | 478006 | 27753 |
| Vibrio cholerae B33 | NA | NA | NA | animal-associated habitat | 417400 | 18499 |
| Staphylococcus aureus Mu3 | NA | NA | NA | animal-associated habitat | 418127 | 18509 |
| Lactococcus garvieae Lg2 | NA | NA | NA | animal-associated habitat | 420890 | 18707 |
| Lactococcus garvieae ATCC 49156 | NA | NA | NA | animal-associated habitat | 420889 | 18705 |
| Streptococcus suis GZ1 | NA | NA | NA | animal-associated habitat | 423211 | 18737 |
| Staphylococcus aureus Newman | NA | NA | NA | animal-associated habitat | 426430 | 18801 |
| Legionella pneumophila 2300/99 | NA | NA | NA | animal-associated habitat | 423212 | 18743 |
| Coxiella burnetii RSA 334 | NA | NA | NA | animal-associated habitat | 360117 | 18975 |
| Campylobacter fetus | NA | NA | NA | animal-associated habitat | 196 | 7 |
| Bordetella parapertussis 12822 | NA | NA | NA | animal-associated habitat | 257311 | 25 |
| Mycoplasma pneumoniae M129 | NA | NA | NA | animal-associated habitat | 272634 | 99 |
| Neisseria meningitidis MC58 | NA | NA | NA | animal-associated habitat | 122586 | 251 |
| Neisseria meningitidis Z2491 | NA | NA | NA | animal-associated habitat | 122587 | 252 |
| Neisseria meningitidis serogroup C, FAM18 | NA | NA | NA | animal-associated habitat | 272831 | 255 |
| Chlamydophila pneumoniae J138 | NA | NA | NA | animal-associated habitat | 138677 | 257 |
| Desulfovibrio piger ATCC 29098 | NA | NA | NA | animal-associated habitat | 411464 | 18161 |
| Orientia tsutsugamushi Ikeda | NA | NA | NA | animal-associated habitat | 334380 | 18983 |
| Lactobacillus reuteri JCM 1112 | NA | NA | NA | animal-associated habitat | 557433 | 19011 |
| Francisella tularensis FSC022 | NA | NA | NA | animal-associated habitat | 430556 | 19015 |
| Francisella tularensis FSC033 | NA | NA | NA | animal-associated habitat | 430557 | 19017 |
| Porphyromonas gingivalis ATCC 33277 | NA | NA | NA | animal-associated habitat | 431947 | 19051 |
| Ureaplasma urealyticum Co, serovar 7 | NA | NA | NA | animal-associated habitat | 519849 | 19093 |
| Neorickettsia risticii Illinois | NA | NA | NA | animal-associated habitat | 434131 | 19099 |
| Actinobacillus pleuropneumoniae JL03 | NA | NA | NA | animal-associated habitat | 434271 | 19135 |
| Coxiella burnetii G Q212 | NA | NA | NA | animal-associated habitat | 434923 | 19137 |
| Coxiella burnetii K Q154 | NA | NA | NA | animal-associated habitat | 434924 | 19139 |
| Haemophilus parasuis 29755 | NA | NA | NA | animal-associated habitat | 456298 | 20127 |
| Francisella tularensis FTA | NA | NA | NA | animal-associated habitat | 458234 | 20197 |
| Mycobacterium liflandii 128FXT | NA | NA | NA | animal-associated habitat | 459424 | 20227 |
| Mycobacterium marinum DL240490 | NA | NA | NA | animal-associated habitat | 459420 | 20229 |
| Acinetobacter baumannii AB0057 | NA | NA | NA | animal-associated habitat | 480119 | 21111 |
| Yersinia enterocolitica 8081 | NA | NA | NA | animal-associated habitat | 393305 | 190 |
| Enterococcus faecalis V583 | NA | NA | NA | animal-associated habitat | 226185 | 70 |
| Buchnera aphidicola BP | NA | NA | NA | animal-associated habitat | 224915 | 256 |
| Ureaplasma urealyticum Western, serovar 10 | NA | NA | NA | animal-associated habitat | 95664 | 20247 |
| Ureaplasma urealyticum T-strain 960, serovar 8 | NA | NA | NA | animal-associated habitat | 95662 | 19089 |
| Ureaplasma urealyticum 58, serovar 4 | NA | NA | NA | animal-associated habitat | 550748 | 19091 |
| Ureaplasma urealyticum Vancouver, serovar 9 | NA | NA | NA | animal-associated habitat | 550773 | 19095 |
| Haemophilus influenzae HK1212 | NA | NA | NA | animal-associated habitat | 456482 | 20115 |
| Francisella tularensis GA99-3549 | NA | NA | NA | animal-associated habitat | 430558 | 19019 |
| Ureaplasma parvum ATCC 27815 | NA | NA | NA | animal-associated habitat | 505682 | 19087 |
| Burkholderia mallei PRL-20 | NA | NA | NA | animal-associated habitat | 436115 | 19147 |
| Brucella canis ATCC 23365 | NA | NA | NA | animal-associated habitat | 483179 | 20243 |
| Epulopiscium sp. N.t. morphotype B | NA | NA | NA | animal-associated habitat | 420336 | 20181 |
| Ureaplasma parvum U26, serovar 14 | NA | NA | NA | animal-associated habitat | 515609 | 20185 |
| Ureaplasma parvum serovar 1 | NA | NA | NA | animal-associated habitat | 515608 | 20245 |
| Ureaplasma urealyticum U38, serovar 13 | NA | NA | NA | animal-associated habitat | 515611 | 20405 |
| Bacteroides coprocola M16, DSM 17136 | NA | NA | NA | animal-associated habitat | 470145 | 20521 |
| Bacteroides intestinalis 341, DSM 17393 | NA | NA | NA | animal-associated habitat | 471870 | 20523 |
| Coprococcus comes ATCC 27758 | NA | NA | NA | animal-associated habitat | 470146 | 20525 |
| Streptococcus infantarius ATCC BAA-102 | NA | NA | NA | animal-associated habitat | 471872 | 20527 |
| Clostridium sporogenes ATCC 15579 | NA | NA | NA | animal-associated habitat | 471871 | 20549 |
| Proteus penneri ATCC 35198 | NA | NA | NA | animal-associated habitat | 471881 | 20551 |
| Providencia stuartii ATCC 25827 | NA | NA | NA | animal-associated habitat | 471874 | 20553 |
| Bifidobacterium dentium ATCC 27678 | NA | NA | NA | animal-associated habitat | 473819 | 20555 |
| Ruminococcus lactaris ATCC 29176 | NA | NA | NA | animal-associated habitat | 471875 | 20557 |
| Cryptobacterium curtum 12-3T, DSM 15641 | NA | NA | NA | animal-associated habitat | 469378 | 20739 |
| Slackia heliotrinireducens RHS1, DSM 20476 | NA | NA | NA | animal-associated habitat | 471855 | 20831 |
| uncultured termite group 1 bacterium Rs-D17 | NA | NA | NA | animal-associated habitat | 471821 | 20871 |
| Jonesia DSM 20603 | NA | NA | NA | animal-associated habitat | 471856 | 20833 |
| Borrelia burgdorferi 94a | NA | NA | NA | animal-associated habitat | 476212 | 20999 |
| Borrelia burgdorferi 118a | NA | NA | NA | animal-associated habitat | 476210 | 21001 |
| Borrelia burgdorferi 72a | NA | NA | NA | animal-associated habitat | 476211 | 21003 |
| Ruminococcus hydrogenotrophicus S5a33, DSM 10507 | NA | NA | NA | animal-associated habitat | 476272 | 21007 |
| Campylobacter jejuni CG8421 | NA | NA | NA | animal-associated habitat | 478547 | 21037 |
| Bifidobacterium longum BORI | NA | NA | NA | animal-associated habitat | 478445 | 21041 |
| bryantella formatexigens I-52, DSM 14469 | NA | NA | NA | animal-associated habitat | 478749 | 21051 |
| Mycobacterium tuberculosis KZN 4207 (DS) | NA | NA | NA | animal-associated habitat | 478433 | 21053 |
| Mycobacterium tuberculosis KZN 1435 (MDR) | NA | NA | NA | animal-associated habitat | 478434 | 21055 |
| Mycobacterium tuberculosis KZN 605 (XDR) | NA | NA | NA | animal-associated habitat | 478435 | 21057 |
| Veillonella parvula Te3, DSM 2008 | NA | NA | NA | animal-associated habitat | 479436 | 21091 |
| Eggerthella lenta VPI 0255, DSM 2243 | NA | NA | NA | animal-associated habitat | 479437 | 21093 |
| Clostridium difficile QCD-63q42 | NA | NA | NA | animal-associated habitat | 479831 | 21103 |
| Clostridium difficile QCD-76w55, NAP1 | NA | NA | NA | animal-associated habitat | 479832 | 21105 |
| Dichelobacter nodosus VCS1703A | NA | NA | NA | animal-associated habitat | 246195 | 50 |
| Streptococcus pneumoniae SP195 | NA | NA | NA | animal-associated habitat | 453363 | 20541 |
| Streptococcus pneumoniae CDC3059-06 | NA | NA | NA | animal-associated habitat | 453365 | 20543 |
| Streptococcus pneumoniae CDC0288-04 | NA | NA | NA | animal-associated habitat | 453364 | 20545 |
| Streptococcus pneumoniae CDC1873-00 | NA | NA | NA | animal-associated habitat | 453362 | 20775 |
| Streptococcus pneumoniae CDC1087-00 | NA | NA | NA | animal-associated habitat | 453361 | 20777 |
| Streptococcus pneumoniae MLV-016 | NA | NA | NA | animal-associated habitat | 453366 | 20967 |
| Escherichia coli c7122 | NA | NA | NA | animal-associated habitat | 475609 | 20733 |
| Salmonella enterica RKS4594 | NA | NA | NA | animal-associated habitat | 476213 | 20993 |
| Brucella suis ATCC 23445 | NA | NA | NA | animal-associated habitat | 470137 | 20371 |
| Salmonella enterica HI_N05-537 SL484 | NA | NA | NA | animal-associated habitat | 465518 | 20591 |
| Salmonella enterica RI_05P066 | NA | NA | NA | animal-associated habitat | 465516 | 20593 |
| Pasteurella multocida Pm70 type A | NA | NA | NA | animal-associated habitat | 272843 | 39 |
| Anaplasma marginale St. Maries | NA | NA | NA | animal-associated habitat | 234826 | 40 |
| Rickettsia conorii Malish 7 | NA | NA | NA | animal-associated habitat | 272944 | 42 |
| Coxiella burnetii Nine Mile phase I / RSA 493 | NA | NA | NA | animal-associated habitat | 227377 | 41 |
| Rickettsia prowazekii Madrid E | NA | NA | NA | animal-associated habitat | 272947 | 43 |
| Bartonella quintana Toulouse | NA | NA | NA | animal-associated habitat | 283165 | 44 |
| Mycoplasma genitalium G37 | NA | NA | NA | animal-associated habitat | 243273 | 97 |
| Histophilus somni 2336 | NA | NA | NA | animal-associated habitat | 228400 | 388 |
| Bacteroides thetaiotaomicron VPI-5482 | NA | NA | NA | animal-associated habitat | 226186 | 399 |
| Chlamydophila pneumoniae TW-183 | NA | NA | NA | animal-associated habitat | 182082 | 420 |
| Wolinella succinogenes DSM 1740 | NA | NA | NA | animal-associated habitat | 273121 | 445 |
| Lactobacillus johnsonii NCC533 | NA | NA | NA | animal-associated habitat | 257314 | 9638 |
| Propionibacterium acnes KPA171202 | NA | NA | NA | animal-associated habitat | 267747 | 12460 |
| Bacillus cereus E33L (ZK) | NA | NA | NA | animal-associated habitat | 288681 | 12468 |
| Staphylococcus haemolyticus JCSC1435 | NA | NA | NA | animal-associated habitat | 279808 | 12508 |
| Unclassified candidatus baumannia cicadellinicola Hc | NA | NA | NA | animal-associated habitat | 374463 | 12513 |
| Brucella ovis ATCC25840 | NA | NA | NA | animal-associated habitat | 444178 | 12514 |
| Campylobacter coli RM2228 | NA | NA | NA | animal-associated habitat | 306254 | 12516 |
| Campylobacter lari RM2100 | NA | NA | NA | animal-associated habitat | 306263 | 12517 |
| Campylobacter upsaliensis RM3195 | NA | NA | NA | animal-associated habitat | 306264 | 12518 |
| Wolbachia endosymbiont of brugia malayi TRS | NA | NA | NA | animal-associated habitat | 292805 | 12475 |
| Chlamydia trachomatis D/UW-3/CX (serovar D) | NA | NA | NA | animal-associated habitat | 272561 | 45 |
| Bacteroides fragilis NCTC9343 | NA | NA | NA | animal-associated habitat | 272559 | 46 |
| Fibrobacter succinogenes S85 | NA | NA | NA | animal-associated habitat | 59374 | 47 |
| Porphyromonas gingivalis W83 | NA | NA | NA | animal-associated habitat | 242619 | 48 |
| Wolbachia endosymbiont of brugia malayi (Brugia malayi) | NA | NA | NA | animal-associated habitat | 80849 | 12515 |
| Lactobacillus casei ATCC 334 | NA | NA | NA | animal-associated habitat | 321967 | 402 |
| Lactobacillus brevis ATCC 367 | NA | NA | NA | animal-associated habitat | 387344 | 404 |
| Serratia marcescens Db11 | NA | NA | NA | animal-associated habitat | 273526 | 406 |
| Actinomyces naeslundii MG1 | NA | NA | NA | animal-associated habitat | 240017 | 12510 |
| Streptococcus pyogenes M6 MGAS10394 | NA | NA | NA | animal-associated habitat | 286636 | 12469 |
| Candidatus Blochmannia | NA | NA | NA | animal-associated habitat | 203907 | 443 |
| Shigella flexneri 2457T | NA | NA | NA | animal-associated habitat | 198215 | 408 |
| Chlamydophila psittaci 6BC | NA | NA | NA | animal-associated habitat | 83554 | 12519 |
| Mycoplasma gallisepticum R | NA | NA | NA | animal-associated habitat | 233150 | 409 |
| Pasteuria nishizawae North American | NA | NA | NA | animal-associated habitat | 238030 | 441 |
| Salmonella enterica SL491 | NA | NA | NA | animal-associated habitat | 465517 | 20595 |
| Mycoplasma bovis Donetta PG45 | NA | NA | NA | animal-associated habitat | 289397 | 12525 |
| Simkania negevensis Z | NA | NA | NA | animal-associated habitat | 83561 | 12528 |
| Vibrio cholerae N16961, Biotype ElTor | NA | NA | NA | animal-associated habitat | 243277 | 36 |
| Ehrlichia chaffeensis Arkansas | NA | NA | NA | animal-associated habitat | 205920 | 325 |
| Bifidobacterium longum NCC2705 | NA | NA | NA | animal-associated habitat | 206672 | 328 |
| Streptococcus mutans UA159 | NA | NA | NA | animal-associated habitat | 210007 | 333 |
| Streptococcus agalactiae NEM316 | NA | NA | NA | animal-associated habitat | 211110 | 334 |
| Anaplasma phagocytophilum HZ | NA | NA | NA | animal-associated habitat | 212042 | 336 |
| Burkholderia cenocepacia J2315 | NA | NA | NA | animal-associated habitat | 95486 | 339 |
| Streptococcus uberis 0140J | NA | NA | NA | animal-associated habitat | 218495 | 353 |
| Tropheryma whipplei TW08/27 | NA | NA | NA | animal-associated habitat | 218496 | 354 |
| Chlamydophila abortus S26/3 | NA | NA | NA | animal-associated habitat | 218497 | 355 |
| Lactobacillus plantarum WCFS1 | NA | NA | NA | animal-associated habitat | 220668 | 356 |
| Neorickettsia sennetsu Miyayama | NA | NA | NA | animal-associated habitat | 222891 | 357 |
| Vibrio parahaemolyticus RIMD 2210633 | NA | NA | NA | animal-associated habitat | 223926 | 360 |
| Pseudomonas aeruginosa PA14 UCBPP | NA | NA | NA | animal-associated habitat | 208963 | 386 |
| Rickettsia rickettsii Sheila Smith | NA | NA | NA | animal-associated habitat | 392021 | 9636 |
| Borrelia garinii PBi, OspA | NA | NA | NA | animal-associated habitat | 290434 | 12554 |
| Proteus mirabilis HI4320 | NA | NA | NA | animal-associated habitat | 529507 | 12624 |
| Streptococcus agalactiae 2603V/R | NA | NA | NA | animal-associated habitat | 208435 | 330 |
| Actinobacillus pleuropneumoniae sv 7 | NA | NA | NA | animal-associated habitat | 209841 | 332 |
| Escherichia coli 042 (EAEC) | NA | NA | NA | animal-associated habitat | 216592 | 340 |
| Streptococcus pneumoniae 23F (Spanish 23F-1) | NA | NA | NA | animal-associated habitat | 216600 | 348 |
| Histophilus somni 129PT | NA | NA | NA | animal-associated habitat | 205914 | 322 |
| Salmonella bongori 12419 | NA | NA | NA | animal-associated habitat | 218493 | 351 |
| Shigella dysenteriae M131649 | NA | NA | NA | animal-associated habitat | 216598 | 346 |
| Shigella sonnei 53G | NA | NA | NA | animal-associated habitat | 216599 | 347 |
| Salmonella enterica ATCC700931 | NA | NA | NA | animal-associated habitat | 209261 | 371 |
| Streptococcus suis P1/7 | NA | NA | NA | animal-associated habitat | 218494 | 352 |
| Chlamydophila felis Fe/C-56 | NA | NA | NA | animal-associated habitat | 264202 | 370 |
| Streptococcus agalactiae A909 | NA | NA | NA | animal-associated habitat | 205921 | 326 |
| Yersinia pestis 91001 | NA | NA | NA | animal-associated habitat | 229193 | 10638 |
| Mycobacterium microti OV254 | NA | NA | NA | animal-associated habitat | 1806 | 12623 |
| Wolbachia endosymbiont of onchocerca volvulus (Onchocerca volvulus) | NA | NA | NA | animal-associated habitat | 77551 | 12625 |
| Shigella flexneri 301 | NA | NA | NA | animal-associated habitat | 198214 | 310 |
| Escherichia coli UPEC-CFT073 | NA | NA | NA | animal-associated habitat | 199310 | 313 |
| Tannerella forsythensis ATCC 43037 | NA | NA | NA | animal-associated habitat | 203275 | 319 |
| Brucella suis 1330 | NA | NA | NA | animal-associated habitat | 204722 | 320 |
| Mycoplasma hyopneumoniae 7448 | NA | NA | NA | animal-associated habitat | 262722 | 10639 |
| Citrobacter koseri CDC 4225-83 | NA | NA | NA | animal-associated habitat | 290338 | 12716 |
| Treponema pallidum CDC2 | NA | NA | NA | animal-associated habitat | 491079 | 30651 |
| Treponema paraluiscuniculi Cuniculi A | NA | NA | NA | animal-associated habitat | 545776 | 30657 |
| Lactobacillus reuteri SD2112 | NA | NA | NA | animal-associated habitat | 491077 | 30643 |
| Lactobacillus crispatus JV V01 | NA | NA | NA | animal-associated habitat | 491076 | 30641 |
| Enterococcus faecalis TX0104 | NA | NA | NA | animal-associated habitat | 491074 | 30623 |
| Burkholderia multivorans CGD2 | NA | NA | NA | animal-associated habitat | 513052 | 30581 |
| Burkholderia multivorans CGD1 | NA | NA | NA | animal-associated habitat | 513051 | 30579 |
| Enterococcus faecium E1679 | NA | NA | NA | animal-associated habitat | 546340 | 30569 |
| Brucella melitensis ATCC 23457 | NA | NA | NA | animal-associated habitat | 546272 | 30561 |
| Yersinia pestis Pestoides A | NA | NA | NA | animal-associated habitat | 545431 | 30511 |
| Yersinia pestis Harbin 35 | NA | NA | NA | animal-associated habitat | 547048 | 30505 |
| Fusobacterium periodonticum ATCC 33693 | NA | NA | NA | animal-associated habitat | 546275 | 30495 |
| Eikenella corrodens ATCC 23834 | NA | NA | NA | animal-associated habitat | 546274 | 30493 |
| Veillonella dispar ATCC 17748 | NA | NA | NA | animal-associated habitat | 546273 | 30491 |
| Selenomonas sputigena ATCC 35185 | NA | NA | NA | animal-associated habitat | 546271 | 30489 |
| Gemella haemolysans ATCC 10379 | NA | NA | NA | animal-associated habitat | 546270 | 30487 |
| Filifactor alocis ATCC 35896 | NA | NA | NA | animal-associated habitat | 546269 | 30485 |
| Neisseria subflava NJ9703 | NA | NA | NA | animal-associated habitat | 546268 | 30483 |
| Neisseria sicca ATCC 29256 | NA | NA | NA | animal-associated habitat | 547045 | 30481 |
| Treponema pallidum SamoaD | NA | NA | NA | animal-associated habitat | 491078 | 30671 |
| Staphylococcus aureus MW2 | NA | NA | NA | animal-associated habitat | 196620 | 306 |
| Francisella tularensis OR96246 | NA | NA | NA | animal-associated habitat | 491123 | 30669 |
| Treponema pallidum Dallas1 | NA | NA | NA | animal-associated habitat | 491081 | 30649 |
| Yersinia pestis PEXU2 | NA | NA | NA | animal-associated habitat | 547046 | 30509 |
| Yersinia pestis India 195 | NA | NA | NA | animal-associated habitat | 547047 | 30507 |
| Streptococcus pyogenes MGAS315 | NA | NA | NA | animal-associated habitat | 198466 | 311 |
| Buchnera aphidicola SG | NA | NA | NA | animal-associated habitat | 198804 | 312 |
| Francisella novicida FTE | NA | NA | NA | animal-associated habitat | 545422 | 30717 |
| Streptococcus pyogenes M3 (SSI-1) | NA | NA | NA | animal-associated habitat | 193567 | 301 |
| Rickettsia canadensis McKiel | NA | NA | NA | animal-associated habitat | 293613 | 12952 |
| Yersinia pseudotuberculosis IP32953 | NA | NA | NA | animal-associated habitat | 273123 | 12950 |
| Vibrio fischeri ES114 | NA | NA | NA | animal-associated habitat | 312309 | 12986 |
| Neisseria polysaccharea ATCC 43768 | NA | NA | NA | animal-associated habitat | 546267 | 30479 |
| Neisseria mucosa ATCC 25996 | NA | NA | NA | animal-associated habitat | 546266 | 30477 |
| Neisseria lactamica ATCC 23970 | NA | NA | NA | animal-associated habitat | 546265 | 30475 |
| Neisseria elongata ATCC 29315 | NA | NA | NA | animal-associated habitat | 546263 | 30471 |
| Neisseria cinerea ATCC 14685 | NA | NA | NA | animal-associated habitat | 546262 | 30469 |
| Francisella tularensis MA00-2987 | NA | NA | NA | animal-associated habitat | 543737 | 30443 |
| Helicobacter pylori B128 | NA | NA | NA | animal-associated habitat | 544406 | 30397 |
| Helicobacter pylori 98-10 | NA | NA | NA | animal-associated habitat | 544405 | 30395 |
| Clostridium celatum DSM 1785 | NA | NA | NA | animal-associated habitat | 545697 | 30375 |
| Bifidobacterium pseudocatenulatum DSM 20438 | NA | NA | NA | animal-associated habitat | 547043 | 30373 |
| Bacteroides coprophilus DSM 18228 | NA | NA | NA | animal-associated habitat | 547042 | 30371 |
| Clostridium hiranonis DSM 13275 | NA | NA | NA | animal-associated habitat | 500633 | 30369 |
| Holdemania filiformis VPI J1-31B-1, DSM 12042 | NA | NA | NA | animal-associated habitat | 545696 | 30361 |
| Stenotrophomonas maltophilia K279a | NA | NA | NA | animal-associated habitat | 522373 | 30351 |
| Wolbachia wPip | NA | NA | NA | animal-associated habitat | 955 | 30313 |
| Treponema azotonutricium ZAS9 | NA | NA | NA | animal-associated habitat | 545695 | 30191 |
| Treponema primitia ZAS-2 | NA | NA | NA | animal-associated habitat | 545694 | 30189 |
| Lactobacillus paracasei 8700:2 | NA | NA | NA | animal-associated habitat | 537973 | 30077 |
| Helicobacter cinaedi CCUG 18818 | NA | NA | NA | animal-associated habitat | 537971 | 30073 |
| Helicobacter canadensis MIT 98-5491 | NA | NA | NA | animal-associated habitat | 537970 | 30071 |
| Bifidobacterium longum CCUG 52486 | NA | NA | NA | animal-associated habitat | 537937 | 30065 |
| Bifidobacterium bifidum NCIMB 41171 | NA | NA | NA | animal-associated habitat | 398513 | 30055 |
| Clostridium methylpentosum R2, DSM 5476 | NA | NA | NA | animal-associated habitat | 537013 | 30029 |
| Bacteroides cellulosilyticus CRE21, DSM 14838 | NA | NA | NA | animal-associated habitat | 537012 | 30027 |
| Prevotella copri CB7, DSM 18205 | NA | NA | NA | animal-associated habitat | 537011 | 30025 |
| Desulfitobacterium hafniense SP7, DSM 13498 | NA | NA | NA | animal-associated habitat | 537010 | 30023 |
| Ruminococcus hansenii VPI C7-24, DSM 20583 | NA | NA | NA | animal-associated habitat | 537007 | 30021 |
| Parabacteroides johnsonii M-165, DSM 18315 | NA | NA | NA | animal-associated habitat | 387661 | 30007 |
| Roseburia intestinalis L1-82, DSM 14610 | NA | NA | NA | animal-associated habitat | 536231 | 30005 |
| Enterococcus faecium E1162 | NA | NA | NA | animal-associated habitat | 535206 | 29921 |
| Enterococcus faecium E1071 | NA | NA | NA | animal-associated habitat | 535205 | 29887 |
| Burkholderia pseudomallei MSHR346 | NA | NA | NA | animal-associated habitat | 536230 | 29855 |
| Clostridium perfringens ATCC 13124 | NA | NA | NA | animal-associated habitat | 195103 | 304 |
| Neisseria flavescens NRL30031/H210 | NA | NA | NA | animal-associated habitat | 546264 | 30473 |
| Lactobacillus casei BL23 | NA | NA | NA | animal-associated habitat | 543734 | 30359 |
| Helicobacter pullorum MIT 98-5489 | NA | NA | NA | animal-associated habitat | 537972 | 30075 |
| Escherichia coli K12 DH10B | NA | NA | NA | animal-associated habitat | 316385 | 30003 |
| Actinobacillus pleuropneumoniae sv 7 AP76 | NA | NA | NA | animal-associated habitat | 537457 | 29909 |
| Rickettsia akari Hartford | NA | NA | NA | animal-associated habitat | 293614 | 12953 |
| Acinetobacter baumannii VEB | NA | NA | NA | animal-associated habitat | 470 | 13000 |
| Acinetobacter baumannii SDF | NA | NA | NA | animal-associated habitat | 509170 | 13001 |
| Salmonella enterica RSK2980 | NA | NA | NA | animal-associated habitat | 41514 | 13030 |
| Salmonella enterica CDC 01-0005 | NA | NA | NA | animal-associated habitat | 59204 | 13031 |
| Nocardia farcinica IFM 10152 | NA | NA | NA | animal-associated habitat | 247156 | 13117 |
| Legionella pneumophila Lens | NA | NA | NA | animal-associated habitat | 297245 | 13126 |
| Legionella pneumophila Paris | NA | NA | NA | animal-associated habitat | 297246 | 13127 |
| Shigella dysenteriae Sd197 | NA | NA | NA | animal-associated habitat | 300267 | 13145 |
| Shigella boydii Sb227 | NA | NA | NA | animal-associated habitat | 300268 | 13146 |
| Atopobium minutum ATCC 33267 | NA | NA | NA | animal-associated habitat | 1381 | 13208 |
| Lactobacillus salivarius UCC118 | NA | NA | NA | animal-associated habitat | 362948 | 13280 |
| Streptococcus pyogenes M49 591 | NA | NA | NA | animal-associated habitat | 294934 | 13286 |
| Chlamydia trachomatis F/IC-Cal3 | NA | NA | NA | animal-associated habitat | 527018 | 29787 |
| Yersinia ruckeri ATCC 29473 | NA | NA | NA | animal-associated habitat | 527005 | 29769 |
| Yersinia rohdei ATCC 43380 | NA | NA | NA | animal-associated habitat | 527004 | 29767 |
| Yersinia kristensenii WA 948 | NA | NA | NA | animal-associated habitat | 527015 | 29763 |
| Yersinia kristensenii WE 180/98 | NA | NA | NA | animal-associated habitat | 527016 | 29765 |
| Yersinia kristensenii 490 | NA | NA | NA | animal-associated habitat | 527014 | 29761 |
| Yersinia kristensenii ATCC 33638 | NA | NA | NA | animal-associated habitat | 527012 | 29757 |
| Yersinia frederiksenii 867 | NA | NA | NA | animal-associated habitat | 527011 | 29753 |
| Yersinia frederiksenii 7175 | NA | NA | NA | animal-associated habitat | 527010 | 29751 |
| Yersinia frederiksenii WE 83/02 | NA | NA | NA | animal-associated habitat | 527008 | 29747 |
| Yersinia frederiksenii WA 935 | NA | NA | NA | animal-associated habitat | 527006 | 29789 |
| Chlamydia trachomatis F1 | NA | NA | NA | animal-associated habitat | 527017 | 29737 |
| Bacillus thuringiensis IBL 4222 | NA | NA | NA | animal-associated habitat | 527020 | 29735 |
| Bacillus thuringiensis IBL 200 | NA | NA | NA | animal-associated habitat | 527019 | 29733 |
| Bacillus thuringiensis sv berliner ATCC 10792 | NA | NA | NA | animal-associated habitat | 527031 | 29723 |
| Bacillus thuringiensis sv pakistani t13001 | NA | NA | NA | animal-associated habitat | 527027 | 29721 |
| Bacillus thuringiensis sv thuringiensis T01001 | NA | NA | NA | animal-associated habitat | 527025 | 29719 |
| Bacillus thuringiensis sv kurstaki T03a001 | NA | NA | NA | animal-associated habitat | 527023 | 29711 |
| Bacillus cereus AH1273 | NA | NA | NA | animal-associated habitat | 526994 | 29699 |
| Bacillus cereus AH1272 | NA | NA | NA | animal-associated habitat | 526993 | 29697 |
| Bacillus cereus F65185 | NA | NA | NA | animal-associated habitat | 526989 | 29689 |
| Bacillus cereus 95/8201 | NA | NA | NA | animal-associated habitat | 526979 | 29669 |
| Bacillus cereus R309803 | NA | NA | NA | animal-associated habitat | 526968 | 29647 |
| Bacillus cereus 172560W | NA | NA | NA | animal-associated habitat | 526967 | 29645 |
| Acinetobacter baumannii WBA9388 | NA | NA | NA | animal-associated habitat | 526964 | 29639 |
| Yersinia frederiksenii WA 933 | NA | NA | NA | animal-associated habitat | 527007 | 29745 |
| Escherichia coli NC-7 | NA | NA | NA | animal-associated habitat | 531853 | 29837 |
| Yersinia frederiksenii CNY 867 | NA | NA | NA | animal-associated habitat | 527009 | 29749 |
| Mannheimia succiniciproducens MBEL55E | NA | NA | NA | animal-associated habitat | 221988 | 13068 |
| Salmonella paratyphi SARB42 | NA | NA | NA | animal-associated habitat | 295319 | 13086 |
| Bacteroides fragilis YCH46 | NA | NA | NA | animal-associated habitat | 295405 | 13067 |
| Mycoplasma hyopneumoniae 232 | NA | NA | NA | animal-associated habitat | 295358 | 13120 |
| Shigella sonnei Ss046 | NA | NA | NA | animal-associated habitat | 300269 | 13151 |
| Yersinia kristensenii 105 | NA | NA | NA | animal-associated habitat | 527013 | 29759 |
| Mycoplasma synoviae 53 | NA | NA | NA | animal-associated habitat | 262723 | 10676 |
| Leptospira interrogans Fiocruz L1-130 | NA | NA | NA | animal-associated habitat | 267671 | 10687 |
| Ehrlichia ruminantium Welgevonden, CIRAD | NA | NA | NA | animal-associated habitat | 254945 | 13355 |
| Actinobacillus succinogenes 130Z | NA | NA | NA | animal-associated habitat | 339671 | 13370 |
| Helicobacter mustelae ATCC 43772 | NA | NA | NA | animal-associated habitat | 217 | 13426 |
| Lactobacillus reuteri 100-23 | NA | NA | NA | animal-associated habitat | 349123 | 13431 |
| Listeria ivanovii PAM55 | NA | NA | NA | animal-associated habitat | 1638 | 13441 |
| Pseudoalteromonas atlantica T6c | NA | NA | NA | animal-associated habitat | 342610 | 13454 |
| Pseudoalteromonas tunicata D2 | NA | NA | NA | animal-associated habitat | 87626 | 13456 |
| Neisseria ST-640 | NA | NA | NA | animal-associated habitat | 486 | 13472 |
| Bifidobacterium breve UCC2003 (NCIMB8807) | NA | NA | NA | animal-associated habitat | 326426 | 13487 |
| Borrelia turicatae 91E135 | NA | NA | NA | animal-associated habitat | 314724 | 13597 |
| Enterococcus faecium E980 | NA | NA | NA | animal-associated habitat | 529885 | 29607 |
| Borrelia garinii Far04 | NA | NA | NA | animal-associated habitat | 519049 | 29573 |
| Acinetobacter baumannii WBL7215 | NA | NA | NA | animal-associated habitat | 526963 | 29635 |
| Burkholderia mallei PRL7 | NA | NA | NA | animal-associated habitat | 536228 | 29575 |
| Acinetobacter baumannii WBL7355 | NA | NA | NA | animal-associated habitat | 526962 | 29633 |
| Wolbachia endosymbiont of drosophila ananassae (Drosophila ananassae) | NA | NA | NA | animal-associated habitat | 307502 | 13365 |
| Xenorhabdus bovienii SS-2004 | NA | NA | NA | animal-associated habitat | 406818 | 13399 |
| Wolbachia endosymbiont of drosophila simulans Drosophila simulans | NA | NA | NA | animal-associated habitat | 77038 | 13364 |
| Xenorhabdus nematophila ATCC19061 | NA | NA | NA | animal-associated habitat | 406817 | 13400 |
| Mycoplasma orale | NA | NA | NA | animal-associated habitat | 2121 | 13417 |
| Lactobacillus helveticus CNRZ32 | NA | NA | NA | animal-associated habitat | 1587 | 13430 |
| Bacteroides vulgatus ATCC 8482 | NA | NA | NA | animal-associated habitat | 435590 | 13378 |
| Prochloron didemni | NA | NA | NA | animal-associated habitat | 1216 | 13452 |
| Bartonella bacilliformis | NA | NA | NA | animal-associated habitat | 774 | 13486 |
| Ehrlichia ruminantium GARDES | NA | NA | NA | animal-associated habitat | 302409 | 13356 |
| Enterobacter cloacae | NA | NA | NA | animal-associated habitat | 550 | 13379 |
| Moraxella catarrhalis | NA | NA | NA | animal-associated habitat | 480 | 13412 |
| Mycoplasma haemofelis | NA | NA | NA | animal-associated habitat | 29501 | 13416 |
| Legionella hackeliae LLAP10 | NA | NA | NA | animal-associated habitat | 449 | 13436 |
| Paenibacillus larvae BRL-230010 | NA | NA | NA | animal-associated habitat | 392917 | 13476 |
| Parabacteroides distasonis ATCC 8503 | NA | NA | NA | animal-associated habitat | 435591 | 13485 |
| Haemophilus influenzae R2846 | NA | NA | NA | animal-associated habitat | 262727 | 9620 |
| Haemophilus influenzae R2866 | NA | NA | NA | animal-associated habitat | 262728 | 9621 |
| Ehrlichia canis Jake | NA | NA | NA | animal-associated habitat | 269484 | 10694 |
| Streptococcus pyogenes M28 MGAS6180 | NA | NA | NA | animal-associated habitat | 319701 | 13887 |
| Streptococcus pyogenes M1 MGAS5005 | NA | NA | NA | animal-associated habitat | 293653 | 13888 |
| Ehrlichia chaffeensis Sapulpa | NA | NA | NA | animal-associated habitat | 332415 | 13916 |
| Burkholderia cenocepacia AU 1054 | NA | NA | NA | animal-associated habitat | 331271 | 13919 |
| eubacterium biforme VPI C17-5, DSM 3989 | NA | NA | NA | animal-associated habitat | 518637 | 29269 |
| Providencia alcalifaciens DSM 30120 | NA | NA | NA | animal-associated habitat | 520999 | 29297 |
| Providencia rettgeri DSM 1131 | NA | NA | NA | animal-associated habitat | 521000 | 29299 |
| Methanobrevibacter smithii B181, DSM 11975 | NA | NA | NA | animal-associated habitat | 521001 | 29301 |
| Methanobrevibacter smithii F1, DSM 2374 | NA | NA | NA | animal-associated habitat | 521002 | 29303 |
| Collinsella intestinalis DSM 13280 | NA | NA | NA | animal-associated habitat | 521003 | 29307 |
| Streptobacillus moniliformis DSM 12112 | NA | NA | NA | animal-associated habitat | 519441 | 29309 |
| Haemophilus influenzae 6P18H1 | NA | NA | NA | animal-associated habitat | 521004 | 29317 |
| Haemophilus influenzae 7P49H1 | NA | NA | NA | animal-associated habitat | 521005 | 29319 |
| Neisseria gonorrhoeae NCCP11945 | NA | NA | NA | animal-associated habitat | 521006 | 29335 |
| Borrelia burgdorferi N40 | NA | NA | NA | animal-associated habitat | 521007 | 29357 |
| Gordonia bronchialis DSM 43247 | NA | NA | NA | animal-associated habitat | 526226 | 29549 |
| Brachyspira murdochii 56-150, DSM 12563 | NA | NA | NA | animal-associated habitat | 526224 | 29543 |
| Sebaldella termitidis ATCC 33386 | NA | NA | NA | animal-associated habitat | 526218 | 29539 |
| Anaerococcus prevotii PC 1, DSM 20548 | NA | NA | NA | animal-associated habitat | 525919 | 29533 |
| Desulfovibrio desulfuricans 27774 | NA | NA | NA | animal-associated habitat | 525146 | 29493 |
| Leptotrichia buccalis C-1013-b, DSM 1135 | NA | NA | NA | animal-associated habitat | 523794 | 29445 |
| Capnocytophaga ochracea DSM 7271 | NA | NA | NA | animal-associated habitat | 521097 | 29403 |
| Atopobium parvulum IPP 1246, DSM 20469 | NA | NA | NA | animal-associated habitat | 521095 | 29401 |
| Haemophilus influenzae R393 | NA | NA | NA | animal-associated habitat | 520728 | 29379 |
| Haemophilus influenzae R1838 | NA | NA | NA | animal-associated habitat | 520727 | 29377 |
| Haemophilus influenzae NML-20 | NA | NA | NA | animal-associated habitat | 520726 | 29375 |
| Haemophilus influenzae 22.1-24 | NA | NA | NA | animal-associated habitat | 520729 | 29373 |
| Borrelia burgdorferi DN127 | NA | NA | NA | animal-associated habitat | 521010 | 29363 |
| Borrelia burgdorferi 297 | NA | NA | NA | animal-associated habitat | 521009 | 29361 |
| Borrelia burgdorferi JD1 | NA | NA | NA | animal-associated habitat | 521008 | 29359 |
| Leptospira interrogans 56601 | NA | NA | NA | animal-associated habitat | 189518 | 293 |
| Candidatus Blochmannia candidatus blochmannia pennsylvanicus BPEN | NA | NA | NA | animal-associated habitat | 291272 | 13875 |
| Mycobacterium tuberculosis EAS054 | NA | NA | NA | animal-associated habitat | 520140 | 29329 |
| Mycoplasma mobile 163K | NA | NA | NA | animal-associated habitat | 267748 | 10697 |
| Chlamydia trachomatis HAR-13 | NA | NA | NA | animal-associated habitat | 315277 | 13885 |
| Rickettsia felis URRWXCal2 | NA | NA | NA | animal-associated habitat | 315456 | 13884 |
| Streptococcus pneumoniae 670-6B | NA | NA | NA | animal-associated habitat | 189423 | 292 |
| Fusobacterium nucleatum ATCC 49256 | NA | NA | NA | animal-associated habitat | 209882 | 1419 |
| Vibrio vulnificus YJ016 | NA | NA | NA | animal-associated habitat | 196600 | 1430 |
| Ehrlichia ruminantium Welgevonden, ARC-OVI | NA | NA | NA | animal-associated habitat | 254945 | 9614 |
| Escherichia coli HS | NA | NA | NA | animal-associated habitat | 331112 | 13959 |
| Corynebacterium jeikeium K411 | NA | NA | NA | animal-associated habitat | 306537 | 13967 |
| Rickettsia bellii RML369-C | NA | NA | NA | animal-associated habitat | 336407 | 13996 |
| Candidatus Riesia candidatus riesia pediculicola USDA | NA | NA | NA | animal-associated habitat | 515618 | 29065 |
| Streptococcus pneumoniae BS457 | NA | NA | NA | animal-associated habitat | 512768 | 29067 |
| Streptococcus pneumoniae BS458 | NA | NA | NA | animal-associated habitat | 512769 | 29069 |
| Eubacterium rectale ATCC33656 | NA | NA | NA | animal-associated habitat | 515619 | 29071 |
| Streptococcus pneumoniae BS397 | NA | NA | NA | animal-associated habitat | 512767 | 29075 |
| Clostridium botulinum Ba4 657 | NA | NA | NA | animal-associated habitat | 515621 | 29077 |
| Butyrivibrio clostridium proteoclasticum B316 | NA | NA | NA | animal-associated habitat | 515622 | 29153 |
| Mycobacterium tuberculosis T92 | NA | NA | NA | animal-associated habitat | 515617 | 29169 |
| Anaplasma marginale Mississippi | NA | NA | NA | animal-associated habitat | 517436 | 29205 |
| Anaplasma marginale Puerto Rico | NA | NA | NA | animal-associated habitat | 517437 | 29207 |
| Corynebacterium urealyticum DSM 7109 | NA | NA | NA | animal-associated habitat | 504474 | 29211 |
| Bifidobacterium breve DSM 20213 | NA | NA | NA | animal-associated habitat | 518634 | 29259 |
| Colwellia sp. MT41 | NA | NA | NA | animal-associated habitat | 58049 | 29235 |
| Bifidobacterium angulatum DSM 20098 | NA | NA | NA | animal-associated habitat | 518635 | 29261 |
| Clostridium asparagiforme DSM 15981 | NA | NA | NA | animal-associated habitat | 518636 | 29263 |
| Mycoplasma capricolum 959 | NA | NA | NA | animal-associated habitat | 2095 | 96 |
| Escherichia coli E24377A (ETEC) | NA | NA | NA | animal-associated habitat | 331111 | 13960 |
| Streptococcus sobrinus 6715 | NA | NA | NA | animal-associated habitat | 246202 | 1420 |
| Brucella abortus 9-941 | NA | NA | NA | animal-associated habitat | 262698 | 9619 |
| Streptococcus sanguinis SK36 | NA | NA | NA | animal-associated habitat | 388919 | 13942 |
| Lactobacillus rhamnosus HN001 | NA | NA | NA | animal-associated habitat | 486408 | 29219 |
| Rickettsia sibirica 246 | NA | NA | NA | animal-associated habitat | 272951 | 1414 |
| Mycoplasma arthritidis 158L3-1 | NA | NA | NA | animal-associated habitat | 243272 | 1422 |
| Burkholderia mallei NCTC 10247 | NA | NA | NA | animal-associated habitat | 320389 | 13946 |
| Photorhabdus luminescens TT01 | NA | NA | NA | animal-associated habitat | 243265 | 9605 |
| Burkholderia mallei 10399 | NA | NA | NA | animal-associated habitat | 412021 | 13944 |
| Burkholderia mallei SAVP 1 | NA | NA | NA | animal-associated habitat | 320388 | 13947 |
| Burkholderia mallei JHU | NA | NA | NA | animal-associated habitat | 334803 | 13988 |
| Streptococcus pneumoniae CGSP14 | NA | NA | NA | animal-associated habitat | 516950 | 29179 |
| Burkholderia mallei NCTC 10229 | NA | NA | NA | animal-associated habitat | 412022 | 13943 |
| Burkholderia mallei FMH | NA | NA | NA | animal-associated habitat | 334802 | 13987 |
| Anaplasma marginale Virginia | NA | NA | NA | animal-associated habitat | 403779 | 29209 |
| Mycobacterium tuberculosis 94_M4241A | NA | NA | NA | animal-associated habitat | 515615 | 29165 |
| Mycobacterium tuberculosis 02_1987 | NA | NA | NA | animal-associated habitat | 515616 | 29167 |
| Staphylococcus epidermidis RP62A | NA | NA | NA | animal-associated habitat | 176279 | 64 |
| Helicobacter pylori 26695 | NA | NA | NA | animal-associated habitat | 85962 | 233 |
| Helicobacter pylori J99 | NA | NA | NA | animal-associated habitat | 85963 | 234 |
| Chlamydophila pneumoniae AR39 | NA | NA | NA | animal-associated habitat | 115711 | 247 |
| Ureaplasma urealyticum ATCC 27817 | NA | NA | NA | animal-associated habitat | 518603 | 19415 |
| Bifidobacterium animalis AD011 | NA | NA | NA | animal-associated habitat | 442563 | 19423 |
| Burkholderia pseudomallei BCC215 | NA | NA | NA | animal-associated habitat | 441152 | 19491 |
| Burkholderia pseudomallei NCTC 13177 (WKo97) | NA | NA | NA | animal-associated habitat | 441153 | 19493 |
| Burkholderia pseudomallei 112 | NA | NA | NA | animal-associated habitat | 441154 | 19495 |
| Burkholderia pseudomallei 14 | NA | NA | NA | animal-associated habitat | 441160 | 19507 |
| Burkholderia pseudomallei DM98 (BCC11) | NA | NA | NA | animal-associated habitat | 441161 | 19509 |
| Burkholderia oklahomensis C6786 | NA | NA | NA | animal-associated habitat | 441162 | 19535 |
| Burkholderia oklahomensis E0147 | NA | NA | NA | animal-associated habitat | 441163 | 19537 |
| Burkholderia thailandensis TXDOH | NA | NA | NA | animal-associated habitat | 441165 | 19541 |
| Francisella tularensis FSC147 | NA | NA | NA | animal-associated habitat | 441952 | 19571 |
| Lysinibacillus sphaericus C3-41 | NA | NA | NA | animal-associated habitat | 444177 | 19619 |
| Francisella tularensis URFT1 | NA | NA | NA | animal-associated habitat | 445226 | 19645 |
| Alistipes putredinis DSM 17216 | NA | NA | NA | animal-associated habitat | 445970 | 19655 |
| Anaerofustis stercorihominis DSM 17244 | NA | NA | NA | animal-associated habitat | 445971 | 19657 |
| Anaerotruncus colihominis DSM 17241 | NA | NA | NA | animal-associated habitat | 445972 | 19659 |
| Streptococcus mutans NN2025 | NA | NA | NA | animal-associated habitat | 511691 | 28997 |
| Butyrivibrio crossotus DSM 2876 | NA | NA | NA | animal-associated habitat | 511680 | 28999 |
| Mycoplasma crocodyli MP145 | NA | NA | NA | animal-associated habitat | 512564 | 29021 |
| Helicobacter pylori Shi470 | NA | NA | NA | animal-associated habitat | 512562 | 29045 |
| Streptococcus pneumoniae G54 (MLST ST63) | NA | NA | NA | animal-associated habitat | 512566 | 29047 |
| Staphylococcus aureus RF122 bovine | NA | NA | NA | animal-associated habitat | 273036 | 63 |
| Ruminococcus albus 8 | NA | NA | NA | animal-associated habitat | 246199 | 62 |
| Salmonella typhimurium DT104 | NA | NA | NA | animal-associated habitat | 85569 | 232 |
| Bartonella henselae Houston-1 | NA | NA | NA | animal-associated habitat | 283166 | 196 |
| Salmonella enterica subsp. enterica serovar Dublin | NA | NA | NA | animal-associated habitat | 98360 | 240 |
| Buchnera aphidicola APS | NA | NA | NA | animal-associated habitat | 107806 | 245 |
| Ureaplasma urealyticum K2, serovar 11 | NA | NA | NA | animal-associated habitat | 526347 | 19417 |
| Ureaplasma urealyticum U24, serovar 12 | NA | NA | NA | animal-associated habitat | 550747 | 19419 |
| Ochrobactrum anthropi ATCC 49188 | NA | NA | NA | animal-associated habitat | 439375 | 19485 |
| Escherichia coli RS218 (NMEC) | NA | NA | NA | animal-associated habitat | 439184 | 19411 |
| Burkholderia pseudomallei 9 | NA | NA | NA | animal-associated habitat | 441158 | 19503 |
| Ureaplasma parvum ATCC 27818 | NA | NA | NA | animal-associated habitat | 519851 | 19413 |
| Burkholderia pseudomallei 7894 | NA | NA | NA | animal-associated habitat | 441156 | 19497 |
| Francisella tularensis GA99-3548 | NA | NA | NA | animal-associated habitat | 442346 | 19573 |
| Candidatus Sulcia candidatus sulcia muelleri GWSS | NA | NA | NA | animal-associated habitat | 444179 | 19617 |
| Neisseria gonorrhoeae FA1090 | NA | NA | NA | animal-associated habitat | 242231 | 23 |
| Haemophilus influenzae Rd (KW20) | NA | NA | NA | animal-associated habitat | 71421 | 219 |
| Mycobacterium tuberculosis CDC1551 (Oshkosh) | NA | NA | NA | animal-associated habitat | 83331 | 223 |
| Mycobacterium tuberculosis H37Rv (lab strain) | NA | NA | NA | animal-associated habitat | 83332 | 224 |
| Escherichia coli K12- MG1655 | NA | NA | NA | animal-associated habitat | 511145 | 225 |
| Escherichia coli Sakai (EHEC) | NA | NA | NA | animal-associated habitat | 386585 | 226 |
| Unclassified oceanospirillales bacterium 'osedax endosymbiont' Osedax endosymbiont | NA | NA | NA | animal-associated habitat | 439485 | 19329 |
| Clostridium bartlettii DSM 16795 | NA | NA | NA | animal-associated habitat | 445973 | 19661 |
| clostridium ramosum DSM 1402 | NA | NA | NA | animal-associated habitat | 445974 | 19663 |
| Collinsella stercoris DSM 13279 | NA | NA | NA | animal-associated habitat | 445975 | 19665 |
| Elusimicrobium minutum Pei 191 | NA | NA | NA | animal-associated habitat | 445932 | 19701 |
| Sanguibacter keddieii ST-74, DSM 10542 | NA | NA | NA | animal-associated habitat | 446469 | 19711 |
| Borrelia afzelii ACA-1 | NA | NA | NA | animal-associated habitat | 445986 | 19841 |
| Bacteroides stercoris ATCC 43183 | NA | NA | NA | animal-associated habitat | 449673 | 19859 |
| Catenibacterium mitsuokai DSM 15897 | NA | NA | NA | animal-associated habitat | 451640 | 19923 |
| Roseburia faecis M72/1 | NA | NA | NA | animal-associated habitat | 451638 | 19925 |
| Ruminococcus sp. GM2/1 | NA | NA | NA | animal-associated habitat | 451639 | 19927 |
| Phenylobacterium zucineum HLK1 | NA | NA | NA | animal-associated habitat | 450851 | 19931 |
| Bacillus cereus H3081.97 | NA | NA | NA | animal-associated habitat | 451708 | 19957 |
| Staphylococcus aureus D30 | NA | NA | NA | animal-associated habitat | 455227 | 19993 |
| Clostridium butyricum 5521 | NA | NA | NA | animal-associated habitat | 447214 | 20023 |
| Clostridium perfringens type B - ATCC 3626 | NA | NA | NA | animal-associated habitat | 451754 | 20027 |
| Treponema pallidum SS14 | NA | NA | NA | animal-associated habitat | 455434 | 20067 |
| Campylobacter hominis ATCC BAA-381 | NA | NA | NA | animal-associated habitat | 360107 | 20083 |
| Akkermansia muciniphila ATCC BAA-835 | NA | NA | NA | animal-associated habitat | 349741 | 20089 |
| Clostridium difficile QCD-66c26 | NA | NA | NA | animal-associated habitat | 455631 | 20093 |
| Mannheimia haemolytica PHL213 (ST1) | NA | NA | NA | animal-associated habitat | 272629 | 221 |
| Chlamydia muridarum MoPn / Nigg | NA | NA | NA | animal-associated habitat | 243161 | 229 |
| Streptococcus gordonii Challis CH1 | NA | NA | NA | animal-associated habitat | 467705 | 66 |
| Nocardiopsis dassonvillei DSM 43111 | NA | NA | NA | animal-associated habitat | 446468 | 19709 |
| Actinobacillus pleuropneumoniae 4074 | NA | NA | NA | animal-associated habitat | 228399 | 198 |
| Actinobacillus pleuropneumoniae sv 5 | NA | NA | NA | animal-associated habitat | 44294 | 200 |
| Chlamydophila caviae GPIC | NA | NA | NA | animal-associated habitat | 227941 | 228 |
| Borrelia burgdorferi ZS7 | NA | NA | NA | animal-associated habitat | 445985 | 19839 |
| Rickettsia prowazekii RP22 | NA | NA | NA | animal-associated habitat | 449216 | 19813 |
| Borrelia burgdorferi Bol26 | NA | NA | NA | animal-associated habitat | 445984 | 19837 |
| Rickettsia rickettsii Iowa | NA | NA | NA | animal-associated habitat | 452659 | 19943 |
| Borrelia burgdorferi 156a | NA | NA | NA | animal-associated habitat | 445983 | 19835 |
| Borrelia valaisiana VS116 | NA | NA | NA | animal-associated habitat | 445987 | 19843 |
| Mycoplasma agalactiae VP20-L15/02 | NA | NA | NA | animal-associated habitat | 452658 | 19953 |
| Staphylococcus aureus USA300_TCH959 | NA | NA | NA | animal-associated habitat | 450394 | 19921 |
| Clostridium perfringens type E - JGS1987 | NA | NA | NA | animal-associated habitat | 451755 | 20029 |
| Clostridium perfringens type C - JGS1495 | NA | NA | NA | animal-associated habitat | 445334 | 20025 |
| Clostridium perfringens CPE F4969 | NA | NA | NA | animal-associated habitat | 451756 | 20031 |
| Clostridium perfringens NCTC 8239 | NA | NA | NA | animal-associated habitat | 451757 | 20033 |
| Citrobacter rodentium ICC168 | NA | NA | NA | animal-associated habitat | 67825 | 13422 |
| Chlamydophila pneumoniae CWL029 | NA | NA | NA | animal-associated habitat | 115713 | 248 |
| Listeria monocytogenes FSL R2-561 | NA | NA | NA | animal-associated habitat | 393126 | 17317 |
| Listeria monocytogenes FSL J2-071 | NA | NA | NA | animal-associated habitat | 393121 | 17307 |
| Listeria seeligeri | NA | NA | NA | animal-associated habitat | 1640 | 13442 |
| Salmonella enterica LK5 | NA | NA | NA | animal-associated habitat | 272989 | 32 |
| Borrelia burgdorferi B31 | NA | NA | NA | animal-associated habitat | 224326 | 3 |
| Treponema pallidum Nichols | NA | NA | NA | animal-associated habitat | 243276 | 5 |
| Treponema denticola ATTC35405 | NA | NA | NA | animal-associated habitat | 243275 | 4 |
| Campylobacter jejuni NCTC 11168 | NA | NA | NA | animal-associated habitat | 192222 | 8 |
| Francisella tularensis SCHU S4 | NA | NA | NA | animal-associated habitat | 177416 | 9 |
| Legionella pneumophila Philadelphia-1 | NA | NA | NA | animal-associated habitat | 272624 | 22 |
| Bordetella bronchiseptica RB50 | NA | NA | NA | animal-associated habitat | 257310 | 24 |
| Klebsiella pneumoniae MGH78578 | NA | NA | NA | animal-associated habitat | 272620 | 31 |
| Salmonella enterica subsp. enterica serovar Pullorum | NA | NA | NA | animal-associated habitat | 605 | 33 |
| Yersinia pestis CO-92 | NA | NA | NA | animal-associated habitat | 214092 | 34 |
| Lactobacillus acidophilus NCFM | NA | NA | NA | animal-associated habitat | 272621 | 82 |
| Corynebacterium diphtheriae NCTC 13129 | NA | NA | NA | animal-associated habitat | 257309 | 87 |
| Prevotella intermedia 17 | NA | NA | NA | animal-associated habitat | 246198 | 175 |
| Burkholderia pseudomallei K96243 | NA | NA | NA | animal-associated habitat | 272560 | 178 |
| Salmonella enterica CT18 | NA | NA | NA | animal-associated habitat | 220341 | 236 |
| Staphylococcus aureus Mu50 (VRSA) | NA | NA | NA | animal-associated habitat | 158878 | 263 |
| Fusobacterium nucleatum | NA | NA | NA | animal-associated habitat | 190304 | 295 |
| Bacillus anthracis A2012 | NA | NA | NA | animal-associated habitat | 191218 | 299 |
| Vibrio vulnificus CMCP6 | NA | NA | NA | animal-associated habitat | 216895 | 349 |
| Salmonella enterica SC-B67 | NA | NA | NA | animal-associated habitat | 321314 | 9618 |
| Candidatus Protochlamydia candidatus protochlamydia amoebophila UWE25 | NA | NA | NA | animal-associated habitat | 264201 | 10700 |
| Ochrobactrum anthropi | NA | NA | NA | animal-associated habitat | 529 | 13383 |
| Escherichia coli B7A (CS6:LT+:ST+)(ETEC) | NA | NA | NA | animal-associated habitat | 340184 | 15572 |
| Mycobacterium ulcerans Agy99 | NA | NA | NA | animal-associated habitat | 362242 | 16230 |
| Granulibacter bethesdensis CGDNIH1 | NA | NA | NA | animal-associated habitat | 391165 | 17111 |
| Listeria monocytogenes FSL J2-003 | NA | NA | NA | animal-associated habitat | 393120 | 17305 |
| Shewanella halifaxensis ANG-SQ1 | NA | NA | NA | animal-associated habitat | 398579 | 17415 |
| Campylobacter jejuni 81116 | NA | NA | NA | animal-associated habitat | 407148 | 17953 |
| Renibacterium salmoninarum ATCC 33209 | NA | NA | NA | animal-associated habitat | 288705 | 19227 |
| Unclassified verrucomicrobiae bacterium dg1235 DG1235 | NA | NA | NA | animal-associated habitat | 382464 | 19391 |
| Ureaplasma urealyticum 23, serovar 2 | NA | NA | NA | animal-associated habitat | 95657 | 20687 |
| Streptococcus pyogenes M49, NZ131 | NA | NA | NA | animal-associated habitat | 471876 | 20707 |
| Clostridium difficile QCD-97b34, NAP1b/006 | NA | NA | NA | animal-associated habitat | 479833 | 21107 |
| Clostridium difficile QCD-37x79, NAP1a/001 | NA | NA | NA | animal-associated habitat | 479834 | 21109 |
| Salmonella enterica 404ty | NA | NA | NA | animal-associated habitat | 497977 | 28289 |
| Salmonella enterica E00-7866 | NA | NA | NA | animal-associated habitat | 497976 | 28291 |
| Helicobacter hepaticus 3B1 | NA | NA | NA | animal-associated habitat | 235279 | 185 |
| Staphylococcus aureus COL | NA | NA | NA | animal-associated habitat | 93062 | 238 |
| Staphylococcus aureus MSSA476 | NA | NA | NA | animal-associated habitat | 282459 | 266 |
| Wolbachia endosymbiont of drosophila melanogaster wMel | NA | NA | NA | animal-associated habitat | 163164 | 272 |
| Treponema pallidum Gauthier | NA | NA | NA | animal-associated habitat | 491080 | 30653 |
| Streptococcus equinus TX20005 | NA | NA | NA | animal-associated habitat | 545774 | 30645 |
| Borrelia hermsii DAH | NA | NA | NA | animal-associated habitat | 314723 | 29637 |
| Acinetobacter baumannii AYE | NA | NA | NA | animal-associated habitat | 509173 | 28921 |
| Escherichia coli K12- W3110 | NA | NA | NA | animal-associated habitat | 316407 | 16351 |
| Streptococcus pyogenes MGAS9429 | NA | NA | NA | animal-associated habitat | 370551 | 16363 |
| Streptococcus pyogenes MGAS10270 | NA | NA | NA | animal-associated habitat | 370552 | 16364 |
| Streptococcus pyogenes MGAS2096 | NA | NA | NA | animal-associated habitat | 370553 | 16365 |
| Streptococcus pyogenes MGAS10750 | NA | NA | NA | animal-associated habitat | 370554 | 16366 |
| Wolbachia endosymbiont of drosophila willistoni (Drosophila willistoni TSC#14030-0811.24) | NA | NA | NA | animal-associated habitat | 384035 | 16739 |
| Unclassified calyptogena okutanii thioautotrophic gill symbiont HA | NA | NA | NA | animal-associated habitat | 412965 | 18267 |
| Rickettsia typhi Wilmington | NA | NA | NA | animal-associated habitat | 257363 | 10679 |
| Streptococcus suis 89/1591 | NA | NA | NA | animal-associated habitat | 286604 | 12417 |
| Staphylococcus aureus JH1 VISA | NA | NA | NA | animal-associated habitat | 359787 | 15758 |
| Mycoplasma agalactiae PG2 | NA | NA | NA | animal-associated habitat | 347257 | 16095 |
| Mycobacterium tuberculosis C | NA | NA | NA | animal-associated habitat | 348776 | 16172 |
| Mycobacterium ulcerans 1615 | NA | NA | NA | animal-associated habitat | 459428 | 20231 |
| Mycoplasma alligatoris | NA | NA | NA | animal-associated habitat | 47687 | 13414 |
| Mycoplasma fermentans | NA | NA | NA | animal-associated habitat | 2115 | 13415 |
| Tsukamurella paurometabola DSM 20162 | NA | NA | NA | animal-associated habitat | 521096 | 29399 |
| Burkholderia mallei GB8 horse 4 | NA | NA | NA | animal-associated habitat | 320390 | 13945 |
| Burkholderia pseudomallei B7210 | NA | NA | NA | animal-associated habitat | 441155 | 19499 |
| Burkholderia pseudomallei 91 | NA | NA | NA | animal-associated habitat | 441159 | 19505 |
| Staphylococcus aureus MRSA USA300_TCH1516 | NA | NA | NA | animal-associated habitat | 451516 | 19489 |
| Flavobacterium psychrophilum JIP02/86 | NA | NA | NA | animal-associated habitat | 402612 | 19979 |
| Staphylococcus aureus 930918-3 | NA | NA | NA | animal-associated habitat | 452948 | 20007 |
| Streptococcus agalactiae 515 | NA | NA | NA | animal-associated habitat | 342614 | 15606 |
| Streptococcus agalactiae COH1 | NA | NA | NA | animal-associated habitat | 342616 | 15609 |
| Streptococcus agalactiae 18RS21 | NA | NA | NA | animal-associated habitat | 342613 | 15605 |
| Streptococcus agalactiae CJB111 | NA | NA | NA | animal-associated habitat | 342617 | 15607 |
| Streptococcus agalactiae H36B | NA | NA | NA | animal-associated habitat | 342615 | 15608 |
| Shigella boydii BS512,CDC 3083-94 | NA | NA | NA | animal-associated habitat | 344609 | 15637 |
| Staphylococcus xylosus C2a | NA | NA | NA | animal-associated habitat | 1288 | 15714 |
| Streptococcus salivarius JIM8777 | NA | NA | NA | animal-associated habitat | 347253 | 15715 |
| Streptococcus salivarius JIM8780 | NA | NA | NA | animal-associated habitat | 347254 | 15724 |
| Streptococcus iniae 9117 | NA | NA | NA | animal-associated habitat | 386894 | 16831 |
| Streptococcus mitis NCTC 12261 | NA | NA | NA | animal-associated habitat | 246201 | 173 |
| Streptococcus suis 05HAH33 | NA | NA | NA | animal-associated habitat | 391297 | 17157 |
| Streptococcus pneumoniae SP3-BS71 | NA | NA | NA | animal-associated habitat | 406556 | 17957 |
| Streptococcus pneumoniae SP6-BS73 | NA | NA | NA | animal-associated habitat | 406557 | 17959 |
| Streptococcus pneumoniae SP9-BS68 | NA | NA | NA | animal-associated habitat | 406558 | 17961 |
| Streptococcus pneumoniae SP11-BS70 | NA | NA | NA | animal-associated habitat | 406559 | 17963 |
| Clostridium perfringens JGS1721 | NA | NA | NA | animal-associated habitat | 488537 | 28587 |
| Streptomyces sp. SPB74 | NA | NA | NA | animal-associated habitat | 465543 | 28549 |
| Vibrio fischeri MJ11 | 34 N 132 E | NA | NA | animal-associated habitat | 388396 | 19393 |
