<?xml version="1.0" encoding="UTF-8"?>
<NasReports xmlns="http://gensc.org/ns/gcdml/2.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:gml="http://www.opengis.net/gml">
    <MIGSReports>
        <virus gcatID="not assigned" sourceName="not assigned" sourceVersion="1">
            <ncbiOrganismName>Vibrio parahaemolyticus phage VP16T</ncbiOrganismName>
            <ncbiTaxId>238892</ncbiTaxId>
            <genomeProjectID>not assigned</genomeProjectID>
            <studyData>
                <projectName>Vibrio parahaemolyticus phage VP16T</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>
            <originalSample>
                <physicalMaterial>
                    <samplingTime>
                        <instance>1991-05</instance>
                    </samplingTime>
                    <location>
                        <name>St. Petersburg Pier, Florida, USA</name>
                        <lat>missing</lat>
                        <!-- manually determined -->
                        <lon>missing</lon>
                        <!-- manually determined -->
                    </location>
                    <amount>
                        <na/>
                    </amount>

                    <habitat>
                        <aquatic habitatDesc="marine">
                            <waterBody>
                                <depth>
                                    <measure values="surface" uom="m"/>
                                </depth>
                            </waterBody>
                        </aquatic>
                    </habitat>
                </physicalMaterial>
            </originalSample>

            <isolate>
                <isolationConditions>
                    <na/>
                    <!-- no pid/doi: Kellogg2005, Genetic diversity of related vibriophages isolated from marine environments around Florida and Hawaii, USA -->
                </isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <numReplicons>1</numReplicons>
                <originalHost>
                    <ncbiTaxId>391586</ncbiTaxId>
                    <!-- taxid=exact; host name=Vibrio parahaemolyticus 16; host genomeProjectID: 19395 -->
                    <hostClass>environmental source</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lytic</propagation>
                <encodedTraits/>
            </isolate>
            <nucExtract>
                <method>missing</method>
            </nucExtract>
            <sequencing>
                <nucleicAcidAmplification>LASL</nucleicAcidAmplification>
                <sequencingMethod>dideoxysequencing</sequencingMethod>
                <assembly xmlns:g="http://gensc.org/gcdml">
                    <assemblyMethod>Sequencher</assemblyMethod>
                    <estimatedErrorRate>unknown</estimatedErrorRate>
                    <calculationMethod>unknown</calculationMethod>
                </assembly>
                <sop/>
                <link/>
            </sequencing>
        </virus>

    </MIGSReports>

    <GCDReports>
        <virus gcatID="not assigned" sourceName="www.megx.net/user/mduhaime" sourceVersion="1">
            <ncbiOrganismName>Vibrio parahaemolyticus phage VP16T</ncbiOrganismName>
            <!-- Bradley:  T = "turbid" -->
            <ncbiTaxId>238892</ncbiTaxId>
            <genomeProjectID xmlns:g="http://gensc.org/gcdml">not assigned</genomeProjectID>
            <studyData>
                <projectName>Vibrio parahaemolyticus phage VP16T</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>
            <originalSample>
                <physicalMaterial>
                    <samplingTime>
                        <instance>1991-05</instance>
                    </samplingTime>
                    <location>
                        <name>St. Petersburg Pier, Florida, USA</name>
                        <lat>27.76</lat>
                        <lon>-82.596</lon>
                        <!-- manually determined coords for St Petersburg-->
                        <extension>
                            <samplePointLocation>
                                <pos2D>27.76 -82.596</pos2D>
                                <determinationMethod>manual calculation based on sample location
                                    discription</determinationMethod>
                            </samplePointLocation>
                        </extension>
                    </location>
                    <amount>
                        <na/>
                    </amount>
                    <habitat>
                        <aquatic>
                            <waterBody>
                                <depth>
                                    <measure values="surface" uom="m"/>
                                </depth>
                                <!-- megx interpolated data not possible, sample too close to coast -->
                            </waterBody>
                        </aquatic>
                    </habitat>
                    <materialType>placeholder</materialType>
                </physicalMaterial>
            </originalSample>
            <isolate>
                <isolationConditions>
                    <na/>
                    <!-- no pid/doi: Kellogg2005, Genetic diversity of related vibriophages isolated from marine environments around Florida and Hawaii, USA -->
                </isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <originalHost>
                    <ncbiTaxId>391586</ncbiTaxId>
                    <!-- taxid=exact; host name=Vibrio parahaemolyticus 16; host genomeProjectID: 19395 -->
                    <hostClass>environmental source</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lytic</propagation>
                <encodedTraits/>
            </isolate>
            <nucExtract>
                <method>missing</method>
                <litReference>
                    <na/>
                </litReference>
            </nucExtract>
            <sequencing>
                <nucleicAcidAmplification>LASL</nucleicAcidAmplification>
                <draft sequencingMethods="dideoxysequencing">
                    <contigSet>
                        <idList>AY328852</idList>
                        <assembly>
                            <assemblyMethod>Sequencher</assemblyMethod>
                            <estimatedErrorRate>unknown</estimatedErrorRate>
                            <calculationMethod>unknown</calculationMethod>
                        </assembly>
                    </contigSet>
                </draft>
            </sequencing>
        </virus>
    </GCDReports>

</NasReports>
