<?xml version="1.0" encoding="UTF-8"?>
<NasReports xmlns="http://gensc.org/ns/gcdml/2.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:gml="http://www.opengis.net/gml">
    <MIGSReports>
        <virus gcatID="not assigned" sourceName="not assigned" sourceVersion="1">
            <ncbiOrganismName>Vibrio phage K139</ncbiOrganismName>
            <ncbiTaxId>70734</ncbiTaxId>
            <!-- Bradley group A -->
            <genomeProjectID>14144</genomeProjectID>
            <studyData>
                <projectName>Vibrio phage K139</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>
            <originalSample>
                <organismalMaterial>
                    <samplingTime><instance>1992</instance></samplingTime>
                    <location>
                        <name>Madras, India</name>
                        <lat>missing</lat>
                        <lon>missing</lon>
                    </location>
                    <habitat><aquatic>
                        <waterBody>
                            <depth><na/></depth>
                        </waterBody>
                    </aquatic>
                    <!-- organism associated, NOT aquatic, can not yet be validated --></habitat>
                    <name>
                        <genus>Homo</genus>
                        <species>sapiens</species>
                        <strain></strain>
                        <typeStrain>false</typeStrain>
                    </name>
                </organismalMaterial>
                <!-- Reidl2005: "bacteriopahge originating from a recent clinical isolate of V. cholerae serogroup O139" -->
            </originalSample>
            <isolate>
                <isolationConditions><doi>10.1128/JB.184.23.6592-6601.2002</doi></isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <numReplicons>1</numReplicons>
                <originalHost><ncbiTaxId>45888</ncbiTaxId><!-- taxid = closest; host name: Vibrio cholerae O139 strain MO10 -->
                    <hostClass>laboratory host</hostClass>
                    <!-- V. cholerae strain MO10 is a clinical isolate from the tenth V. cholerae O139 victim in Madras, India in 1992: Matthew Waldor, email 2008-09-07 -->
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <alternateHost><ncbiTaxId>686</ncbiTaxId><!-- taxid = closest; host name: Vibrio cholerae O139 O1 El Tor strain MAK757 -->
                    <hostClass>laboratory host</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </alternateHost><!-- taxid = closest; host name: Vibrio cholerae O1 El Tor strain MAK757 -->
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lysogenic</propagation>
                <encodedTraits>inapplicable</encodedTraits>
            </isolate>

            <nucExtract><method>placeholder</method></nucExtract><!-- Grmiberg method 10.1093/nar/17.21.8893 -->
            <sequencing>
                <nucleicAcidAmplification>pcr</nucleicAcidAmplification>
                <sequencingMethod>dideoxysequencing</sequencingMethod>
                <assembly xmlns:g="http://gensc.org/gcdml">
                    <assemblyMethod>ABI Prism Auto Assembler</assemblyMethod>
                    <estimatedErrorRate>unknown</estimatedErrorRate>
                    <calculationMethod>unknown</calculationMethod></assembly>
                <sop/>
                <link/>
            </sequencing>
        </virus>

    </MIGSReports>

    <GCDReports>
        <virus gcatID="not assigned" sourceName="www.megx.net/user/mduhaime" sourceVersion="1">
            <ncbiOrganismName>Vibrio phage K139</ncbiOrganismName>
            <ncbiTaxId>70734</ncbiTaxId>
            <genomeProjectID>14144</genomeProjectID>
            <studyData>
                <projectName>Vibrio phage K139</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>
            <originalSample>
                <organismalMaterial>
                    <samplingTime><instance>1992</instance></samplingTime>
                    <location>
                        <name>Madras, India</name>
                        <lat>missing</lat>
                        <lon>missing</lon>
                    </location>
                    <habitat><aquatic>
                        <waterBody>
                            <depth><na/></depth>
                        </waterBody>
                    </aquatic>
                        <!-- organism associated, NOT aquatic, can not yet be validated --></habitat>
                    <name>
                        <genus>Homo</genus>
                        <species>sapiens</species>
                        <strain></strain>
                        <typeStrain>false</typeStrain>
                    </name>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                    <extension></extension>
                </organismalMaterial>
                <!-- Reidl2005: "bacteriopahge originating from a recent clinical isolate of V. cholerae serogroup O139" -->
            </originalSample>
            <isolate>
                <isolationConditions>
                    <doi>10.1128/JB.184.23.6592-6601.2002</doi>
                </isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <numReplicons>1</numReplicons>
                <originalHost><ncbiTaxId>45888</ncbiTaxId><!-- taxid = closest; host name: Vibrio cholerae O139 strain MO10 -->
                    <hostClass>laboratory host</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <alternateHost><ncbiTaxId>686</ncbiTaxId><!-- taxid = closest; host name: Vibrio cholerae O139 O1 El Tor strain MAK757 -->
                    <hostClass>laboratory host</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </alternateHost><!-- taxid = closest; host name: Vibrio cholerae O1 El Tor strain MAK757 -->
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lysogenic</propagation>
                <encodedTraits/>
            </isolate>
            <nucExtract>
                <method>placeholder</method><!-- Grimberg: Sucrose/Triton -->
                <litReference>
                    <doi>10.1093/nar/17.21.8893</doi>
                </litReference>
            </nucExtract>
            <sequencing>
                <nucleicAcidAmplification>pcr</nucleicAcidAmplification>
                <complete sequencingMethods="dideoxysequencing">
                    <segment label="" size="33106" gc="48" sequencingMethods="dideoxysequencing">
                        <accession>AF125163</accession>
                        <assembly>
                            <assemblyMethod>ABI Prism Auto Assembler</assemblyMethod>
                            <estimatedErrorRate>unknown</estimatedErrorRate>
                            <calculationMethod>unknown</calculationMethod>
                        </assembly>
                    </segment>
                </complete>
            </sequencing>
        </virus>
    </GCDReports>

</NasReports>
