<?xml version="1.0" encoding="UTF-8"?>
<NasReports xmlns="http://gensc.org/ns/gcdml/2.0"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:gml="http://www.opengis.net/gml">
    <MIGSReports>
        <virus gcatID="not assigned" sourceName="not assigned" sourceVersion="1">
            <ncbiOrganismName>Synechococcus phage S-PM2</ncbiOrganismName>
            <ncbiTaxId>238854</ncbiTaxId>
            <genomeProjectID>15223</genomeProjectID>
            <studyData>
                <projectName>Synechococcus phage S-PM2</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>
            <originalSample>
                <physicalMaterial>
                    <samplingTime>
                        <na/>
                    </samplingTime>
                    <location>
                        <name>Plymouth Sound, United Kingdom</name>
                        <lat>50.3</lat>
                        <lon>-4.2</lon>
                    </location>
                    <amount>
                        <na/>
                    </amount>

                    <habitat>
                        <aquatic habitatDesc="marine">
                            <waterBody>
                                <depth>
                                    <measure values="surface" uom="m"/>
                                </depth>

                            </waterBody>
                        </aquatic>
                    </habitat>
                </physicalMaterial>
            </originalSample>

            <isolate>
                <isolationConditions>
                    <pmid>16349088</pmid>
                </isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <numReplicons>1</numReplicons>
                <originalHost>
                    <ncbiTaxId>32051</ncbiTaxId>
                    <!-- host name: Synechococcus sp. WH 7803 from the North Atlantic (33°45'N, 67°30'W)-->
                    <hostClass>laboratory host</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lytic</propagation>
                <encodedTraits/>
            </isolate>
            <nucExtract>
                <method>Phenol/Chloroform</method>
            </nucExtract>
            <sequencing>
                <nucleicAcidAmplification>placeholder</nucleicAcidAmplification>
                <sequencingMethod>dideoxysequencing</sequencingMethod>
                <assembly xmlns:g="http://gensc.org/gcdml">
                    <assemblyMethod>GAP4</assemblyMethod>
                    <estimatedErrorRate>unknown</estimatedErrorRate>
                    <calculationMethod>unknown</calculationMethod>
                </assembly>
                <sop/>
                <link/>
            </sequencing>
        </virus>

    </MIGSReports>

    <GCDReports>
        <virus gcatID="not assigned" sourceName="www.megx.net/user/mduhaime" sourceVersion="1">
            <ncbiOrganismName>Synechococcus phage S-PM2</ncbiOrganismName>
            <ncbiTaxId>238854</ncbiTaxId>
            <genomeProjectID>15223</genomeProjectID>
            <studyData>
                <projectName>Synechococcus phage S-PM2</projectName>
                <submitToINSDC>true</submitToINSDC>
                <submitToSraOrEna>false</submitToSraOrEna>
                <submitToTraceArchives>false</submitToTraceArchives>
            </studyData>

            <originalSample>
                <physicalMaterial>
                    <samplingTime>
                        <na/>
                    </samplingTime>
                    <location>
                        <name>Plymouth Sound, United Kingdom</name>
                        <lat>50.3</lat>
                        <lon>-4.2</lon>
                        <extension>
                            <samplePointLocation>
                                <pos2D>50.3 -4.2</pos2D>
                                <determinationMethod>manual calculation based on sample location
                                    discription</determinationMethod>
                            </samplePointLocation>
                            <description>coastal water from the English Channel off Plymouth Sound,
                                United Kingdom </description>
                        </extension>
                    </location>
                    <amount>
                        <na/>
                    </amount>
                    <habitat>
                        <aquatic>
                            <waterBody>
                                <depth>
                                    <na/>
                                </depth>
                                <temperature uom="C" values="12.35"
                                    comment="megx.net WOA05 data interpolation: annual average"/>
                                <salinity uom="PSU" values="35.06"
                                    comment="megx.net WOA05 data interpolation: annual average"/>
                                <nitrate uom="micromol/l" values="8.21"
                                    comment="megx.net WOA05 data interpolation: annual average"/>
                                <dissolvedOxygen uom="ml/l" values="6.25"
                                    comment="megx.net WOA05 data interpolation: annual average"/>
                                <phosphate uom="micromol/l" values=""
                                    comment="megx.net WOA05 data interpolation: annual average"/>
                                <anyParameter name="silicate" uom="micromol/l" values=""
                                    comment="megx.net WOA05 data interpolation: annual average"/>

                            </waterBody>
                        </aquatic>
                    </habitat>
                    <materialType>placeholder</materialType>
                </physicalMaterial>
            </originalSample>
            <isolate>
                <isolationConditions>
                    <pmid>16349088</pmid>
                </isolationConditions>
                <cultureCollection>
                    <na>not deposited</na>
                </cultureCollection>
                <subspecificGeneticLineage>inapplicable</subspecificGeneticLineage>
                <originalHost>
                    <ncbiTaxId>32051</ncbiTaxId>
                    <!-- host name: Synechococcus sp. WH7803 from the North Atlantic (33°45'N, 67°30'W)-->
                    <hostClass>laboratory host</hostClass>
                    <healthDiseaseStatus>inapplicable</healthDiseaseStatus>
                </originalHost>
                <pathogenicity>bacteria</pathogenicity>
                <propagation>lytic</propagation>
                <encodedTraits/>
                <extension>
                    <description>"broad host range", but hosts not documented</description>
                    <doi>10.1128/JB.187.9.3188-3200.2005</doi>
                </extension>
            </isolate>
            <nucExtract>
                <method>Phenol/Chloroform</method>
                <litReference>
                    <doi>10.1128/JB.187.9.3188-3200.2005</doi>
                </litReference>
            </nucExtract>
            <sequencing>
                <nucleicAcidAmplification>placeholder</nucleicAcidAmplification>
                <!-- shotgun cloning -->
                <complete sequencingMethods="dideoxysequencing">
                    <segment label="" size="196280" gc="37" sequencingMethods="dideoxysequencing">
                        <accession>AJ630128</accession>
                        <assembly>
                            <assemblyMethod>GAP4</assemblyMethod>
                            <estimatedErrorRate>unknown</estimatedErrorRate>
                            <calculationMethod>unnknown</calculationMethod>
                        </assembly>
                    </segment>
                </complete>
            </sequencing>
        </virus>
    </GCDReports>

</NasReports>

